PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015889204.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

HRT-like

Protein Properties

Length: 492aa MW: 54281.4 Da PI: 9.7306

Description

HRT-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015889204.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HRT-like	49.6	6.4e-16	281	311	1	31
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 iCGv+l + svC+r Pv+gRKRC+eHKG +i XP_015889204.1 281 ICGVALTHDSVCTRAPVEGRKRCAEHKGVKI 311 8***************************875 PP
2	HRT-like	57.1	3e-18	364	394	1	31
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 iCG++l dGs+C+rq+v+g+KRC eHKG+Ri XP_015889204.1 364 ICGFTLTDGSPCRRQAVPGNKRCDEHKGRRI 394 8*****************************7 PP
3	HRT-like	42.5	1.1e-13	458	487	1	30
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmR 30 +CG+++++Gs Ckr+ v+g+KRC++H GmR XP_015889204.1 458 TCGATTKNGSACKRKQVEGNKRCWQHRGMR 487 7****************************9 PP

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:2000033	Biological Process	regulation of seed dormancy process
GO:0097100	Molecular Function	supercoiled DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 492 aa Download sequence Send to blast
MGLGGGQQDE EMVGSDSTAV VFSRLKREDC KRTKHDLVFS QWKILVGPCD WEDYSLGKDG 60 AERYRVHNLP KISTPGLYEL AIAVSHTGLG RNIAKLDPER IVVVYLGHAE NVRTRLQRYG 120 RTGSHLGTCC STAHPTLSLH NGPGLFDDIL SRGYPIVFRW APMQSKSDAQ KTETLLLNTF 180 DYAWNTSING SRRPDEILEK LKKISSSSNR FPAVVRRLLP LSQRQVGIRI KAGKLLATEN 240 NSNPCADEER PNILSRVFKF GRSRPRSVLD TSGITQGNTV ICGVALTHDS VCTRAPVEGR 300 KRCAEHKGVK INGLITVRIS NSNSIYGSQY GVIDSTKSDG HGKSGFRNDT VTVEFHGSKS 360 LGPICGFTLT DGSPCRRQAV PGNKRCDEHK GRRIRKSNSR LVSTEEKPLY VPDVFESNCG 420 DTSEYDNNSA AICNHGRLED EVLSSRINQN KNGIGVVTCG ATTKNGSACK RKQVEGNKRC 480 WQHRGMRAGT CY

Sequence ? help Back to Top

Protein Sequence Length: 492 aa Download sequence Send to blast

MGLGGGQQDE EMVGSDSTAV VFSRLKREDC KRTKHDLVFS QWKILVGPCD WEDYSLGKDG  60
AERYRVHNLP KISTPGLYEL AIAVSHTGLG RNIAKLDPER IVVVYLGHAE NVRTRLQRYG  120
RTGSHLGTCC STAHPTLSLH NGPGLFDDIL SRGYPIVFRW APMQSKSDAQ KTETLLLNTF  180
DYAWNTSING SRRPDEILEK LKKISSSSNR FPAVVRRLLP LSQRQVGIRI KAGKLLATEN  240
NSNPCADEER PNILSRVFKF GRSRPRSVLD TSGITQGNTV ICGVALTHDS VCTRAPVEGR  300
KRCAEHKGVK INGLITVRIS NSNSIYGSQY GVIDSTKSDG HGKSGFRNDT VTVEFHGSKS  360
LGPICGFTLT DGSPCRRQAV PGNKRCDEHK GRRIRKSNSR LVSTEEKPLY VPDVFESNCG  420
DTSEYDNNSA AICNHGRLED EVLSSRINQN KNGIGVVTCG ATTKNGSACK RKQVEGNKRC  480
WQHRGMRAGT CY

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015889204.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015889204.1	0.0	protein EFFECTOR OF TRANSCRIPTION 2-like
TrEMBL	W9R5X1	0.0	W9R5X1_9ROSA; Uncharacterized protein
STRING	XP_010090025.1	0.0	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF9409	31	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56780.1	7e-99	effector of transcription2