PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015889232.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family M-type_MADS
Protein Properties Length: 125aa    MW: 14110.3 Da    PI: 10.0291
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015889232.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF70.31.8e-2271118249
                     ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
          SRF-TF   2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 
                     + enksn+qv fsk r+g++KKA ELSvLCdaeva i+fs+++k++ +
  XP_015889232.1  71 KLENKSNKQVIFSKHRAGLFKKAGELSVLCDAEVAAIVFSPNNKVFCF 118
                     679*****************************************9866 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.810.105.1E-71977IPR009069Cysteine alpha-hairpin motif superfamily
SuperFamilySSF470728.63E-111972IPR009069Cysteine alpha-hairpin motif superfamily
PfamPF067476.4E-72155IPR010625CHCH
PROSITE profilePS5006624.16562122IPR002100Transcription factor, MADS-box
SMARTSM004323.7E-2662121IPR002100Transcription factor, MADS-box
PRINTSPR004043.9E-216484IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.58E-2364118IPR002100Transcription factor, MADS-box
PfamPF003193.3E-2272118IPR002100Transcription factor, MADS-box
PRINTSPR004043.9E-218499IPR002100Transcription factor, MADS-box
PRINTSPR004043.9E-2199120IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 125 aa     Download sequence    Send to blast
MASKPSTPPY PSATRISGSP CYPQYSASLK CLEEYQSDKS KCQEHFDIYK ECKKKETTKK  60
TQNRQKIETK KLENKSNKQV IFSKHRAGLF KKAGELSVLC DAEVAAIVFS PNNKVFCFGI  120
RAPKP
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Required for suppression of cellularization and promotion of nuclear proliferation during early endosperm development. The FERTILIZATION-INDEPENDENT SEED (FIS) polycomb complex is required for suppression of ALG62 expression at the end of the syncytial phase of endosperm development. {ECO:0000269|PubMed:18334668}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015889232.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015889046.11e-87agamous-like MADS-box protein AGL61
RefseqXP_015889232.11e-87agamous-like MADS-box protein AGL61
SwissprotQ9FKK23e-18AGL62_ARATH; Agamous-like MADS-box protein AGL62
TrEMBLA0A2I4EIL42e-27A0A2I4EIL4_JUGRE; cytochrome c oxidase-assembly factor COX23, mitochondrial
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.12e-19AGAMOUS-like 62
Publications ? help Back to Top
  1. Xu W, et al.
    Endosperm and Nucellus Develop Antagonistically in Arabidopsis Seeds.
    Plant Cell, 2016. 28(6): p. 1343-60
    [PMID:27233529]
  2. Figueiredo DD,Batista RA,Roszak PJ,Köhler C
    Auxin production couples endosperm development to fertilization.
    Nat Plants, 2015. 1: p. 15184
    [PMID:27251719]
  3. Figueiredo DD,Batista RA,Roszak PJ,Hennig L,Köhler C
    Auxin production in the endosperm drives seed coat development in Arabidopsis.
    Elife, 2017.
    [PMID:27848912]
  4. Fiume E,Coen O,Xu W,Lepiniec L,Magnani E
    Growth of the Arabidopsis sub-epidermal integument cell layers might require an endosperm signal.
    Plant Signal Behav, 2017. 12(8): p. e1339000
    [PMID:28613109]
  5. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]