PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015889249.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family bHLH
Protein Properties Length: 552aa    MW: 62244.8 Da    PI: 7.9692
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015889249.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH314.4e-10362410555
                     HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                     h + Er+RR+++N++f+ Lr+ +   +    +   +Ka++L+ + eY+ sLq
  XP_015889249.1 362 HMMSERKRREKLNESFHALRSYIXLiS---FGVQKDKASVLTTTREYLTSLQ 410
                     8899*********************99...99999***************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.39E-10355414No hitNo description
PROSITE profilePS5088812.779357409IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.22E-15357429IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.6E-13361427IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.9E-8362410IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.5E-10363415IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 552 aa     Download sequence    Send to blast
MDTAFLADDC SRANYVRVLM QNFGCTYICL WSYLPPPSNC LKFLDGFYNE EKNQPSSSSG  60
TSLAHRLFDG YRGSLFFVLD NDHVPGFAFR NNLPYFHLQE PDLQRMASNQ TQRQFYQEAR  120
IQAVVFMGCK SGEIELGFSN ESQQVNINME TMKTWFPEDF ARQLSPQTEI PPRPNDQNNP  180
PSSSSSSLIS LTMDSPEYSS LLFSLPMSTT SSSSSQIPET SHTESTSLQP LITPTMPHQQ  240
AMQAFARLRN IQFPSPESEA AAMTRAMLAV LSSPSSSSST SHQPPPPINL QPHQFAHSMN  300
PKASLFKKYA PPLGPNTQIN ARSGSRQSML KRSFSFFTNL NIFMRNRQRM QENRPSSTQL  360
HHMMSERKRR EKLNESFHAL RSYIXLISFG VQKDKASVLT TTREYLTSLQ SQISELTKRI  420
QQLEAQVLPS SAKELANGAE TEAGGSSSSI TERVSVRVSQ VSESTSSEEG QLVDLRVILR  480
THRSAEDVVI RILEFLKRVN GIRLLSMEAD SHITKSSPTI RVTLRLRVDQ GNEWDESAFQ  540
EAVRRFVEDL SN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1365370ERKRRE
2366371RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015889249.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015889249.10.0LOW QUALITY PROTEIN: putative transcription factor bHLH041
TrEMBLA0A251NGJ30.0A0A251NGJ3_PRUPE; Uncharacterized protein
STRINGXP_009361721.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41503354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.12e-56bHLH family protein