PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015889304.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family NF-YA
Protein Properties Length: 222aa    MW: 24622.7 Da    PI: 10.3017
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015889304.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA101.96.1e-3269125158
       CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                     d p+YVNaKQy++Il+RRq+Rakle++++l +k+rkpylheSRh hAl+R RgsgGrF
  XP_015889304.1  69 DGPIYVNAKQYHGILRRRQSRAKLEAKNRL-IKTRKPYLHESRHIHALNRVRGSGGRF 125
                     57****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005211.3E-3567128IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115236.33268128IPR001289Nuclear transcription factor Y subunit A
PfamPF020451.8E-2771125IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006163.2E-247193IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS0068607393IPR018362CCAAT-binding factor, conserved site
PRINTSPR006163.2E-24102125IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MKPVFLLNNS NITSSSSQVG HSNLMAHSPY AYTDPYYGGL LTAYGPQFLP QMVGVAPSRV  60
PLPFDLAEDG PIYVNAKQYH GILRRRQSRA KLEAKNRLIK TRKPYLHESR HIHALNRVRG  120
SGGRFLSNKK LQQADSNHAT TMNSEKLQKD TSETQIHQSG FSEYASIVAT HSDITSASDG  180
STMFQRSDHE LPDVSPHMGG ALQCSGRLLH GRTTQHRGSI VR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A2e-2169138268NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015889304.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015889304.11e-165nuclear transcription factor Y subunit A-3-like
TrEMBLA0A251NE752e-89A0A251NE75_PRUPE; Uncharacterized protein
TrEMBLM5W4941e-89M5W494_PRUPE; Uncharacterized protein
STRINGXP_008242196.18e-92(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF69493149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72830.11e-49nuclear factor Y, subunit A3