PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015889356.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family MYB
Protein Properties Length: 296aa    MW: 33510.6 Da    PI: 6.5848
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015889356.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.74.7e-171461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+W+++Ed++l+d+++ +G g W+  +++ g++R++k+c++rw++yl
   XP_015889356.1 14 RGAWSAQEDKILIDYINTHGEGKWRDLPQRAGLKRCGKSCRLRWLNYL 61
                     89********************************************97 PP
2Myb_DNA-binding43.29.4e-1471116546
                      -HHHHHHHHHHHHHTTTT.....-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   5 TteEdellvdavkqlGgg.....tWktIartmgkgRtlkqcksrwqk 46 
                      + eE++l+++++k+lG++      W++Ia +++ gRt++++k++w++
   XP_015889356.1  71 SIEEEDLILKLHKLLGNRylyahIWSLIAGRLP-GRTDNEIKNYWNS 116
                      669******************************.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.2E-22563IPR009057Homeodomain-like
PROSITE profilePS5129422.619965IPR017930Myb domain
SuperFamilySSF466891.39E-2611114IPR009057Homeodomain-like
SMARTSM007172.4E-131363IPR001005SANT/Myb domain
PfamPF002491.2E-151461IPR001005SANT/Myb domain
CDDcd001673.76E-101661No hitNo description
Gene3DG3DSA:1.10.10.601.8E-1964121IPR009057Homeodomain-like
PROSITE profilePS5129414.40766122IPR017930Myb domain
SMARTSM007179.1E-866120IPR001005SANT/Myb domain
PfamPF002495.0E-1171116IPR001005SANT/Myb domain
CDDcd001678.19E-973118No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MGRRPCCAKQ GLNRGAWSAQ EDKILIDYIN THGEGKWRDL PQRAGLKRCG KSCRLRWLNY  60
LRPDIKIGNI SIEEEDLILK LHKLLGNRYL YAHIWSLIAG RLPGRTDNEI KNYWNSKLSK  120
RVLPAENKVQ EDSTHKLQQT VGIINNLETG NNTTTAAASS HQVIRTKAFR CTKVALPSRL  180
LGDDHDQQYQ MADTNSTCAS ECPSCNSDMP CQGDQNHQNL SDFLMDFDIS ELLNLSDFCQ  240
PNEIAECHNV VDAPIPARNN EANFSWCGNL GDTTDAFQPH QDLDFYALSN SFLNRE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-231212225128MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015889356.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015889357.10.0myb-related protein 308 isoform X1
TrEMBLM5VTE13e-83M5VTE1_PRUPE; Uncharacterized protein
STRINGXP_008242210.15e-84(Prunus mume)
STRINGEMJ043315e-84(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G35550.12e-60MYB family protein