PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015889357.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family MYB
Protein Properties Length: 290aa    MW: 32749.7 Da    PI: 6.4975
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015889357.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.84.6e-171461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+W+++Ed++l+d+++ +G g W+  +++ g++R++k+c++rw++yl
   XP_015889357.1 14 RGAWSAQEDKILIDYINTHGEGKWRDLPQRAGLKRCGKSCRLRWLNYL 61
                     89********************************************97 PP
2Myb_DNA-binding46.96.2e-1571110546
                      -HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      + eE++l+++++k+lG++ W++Ia +++ gRt++++k++w++
   XP_015889357.1  71 SIEEEDLILKLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNS 110
                      669***************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.0E-22563IPR009057Homeodomain-like
PROSITE profilePS5129416.213961IPR017930Myb domain
SuperFamilySSF466892.71E-2911108IPR009057Homeodomain-like
SMARTSM007172.4E-131363IPR001005SANT/Myb domain
PfamPF002491.2E-151461IPR001005SANT/Myb domain
CDDcd001673.64E-101661No hitNo description
PROSITE profilePS5129423.33562116IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.9E-2264115IPR009057Homeodomain-like
SMARTSM007171.9E-1266114IPR001005SANT/Myb domain
PfamPF002493.3E-1371110IPR001005SANT/Myb domain
CDDcd001678.85E-1173112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MGRRPCCAKQ GLNRGAWSAQ EDKILIDYIN THGEGKWRDL PQRAGLKRCG KSCRLRWLNY  60
LRPDIKIGNI SIEEEDLILK LHKLLGNRWS LIAGRLPGRT DNEIKNYWNS KLSKRVLPAE  120
NKVQEDSTHK LQQTVGIINN LETGNNTTTA AASSHQVIRT KAFRCTKVAL PSRLLGDDHD  180
QQYQMADTNS TCASECPSCN SDMPCQGDQN HQNLSDFLMD FDISELLNLS DFCQPNEIAE  240
CHNVVDAPIP ARNNEANFSW CGNLGDTTDA FQPHQDLDFY ALSNSFLNRE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C4e-261211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015889357.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015889357.10.0myb-related protein 308 isoform X1
TrEMBLM5VTE19e-86M5VTE1_PRUPE; Uncharacterized protein
STRINGXP_008242210.11e-86(Prunus mume)
STRINGEMJ043311e-86(Prunus persica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G35550.15e-63MYB family protein