PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015889359.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family MYB_related
Protein Properties Length: 261aa    MW: 29525.1 Da    PI: 6.1544
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015889359.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.15.3e-154281546
                     -HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                     + eE++l+++++k+lG++ W++Ia +++ gRt++++k++w++
   XP_015889359.1 42 SIEEEDLILKLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNS 81
                     669***************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500904.24132IPR017877Myb-like domain
SuperFamilySSF466893.18E-191888IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.2E-101844IPR009057Homeodomain-like
PROSITE profilePS5129423.3353387IPR017930Myb domain
SMARTSM007171.9E-123785IPR001005SANT/Myb domain
PfamPF002492.8E-134281IPR001005SANT/Myb domain
CDDcd001672.96E-114483No hitNo description
Gene3DG3DSA:1.10.10.605.4E-204583IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MERPSTKSRF VLFATCLKRC GKSCRLRWLN YLRPDIKIGN ISIEEEDLIL KLHKLLGNRW  60
SLIAGRLPGR TDNEIKNYWN SKLSKRVLPA ENKVQEDSTH KLQQTVGIIN NLETGNNTTT  120
AAASSHQVIR TKAFRCTKVA LPSRLLGDDH DQQYQMADTN STCASECPSC NSDMPCQGDQ  180
NHQNLSDFLM DFDISELLNL SDFCQPNEIA ECHNVVDAPI PARNNEANFS WCGNLGDTTD  240
AFQPHQDLDF YALSNSFLNR E
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-2088728108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015889359.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015889359.10.0transcription factor TT2 isoform X2
TrEMBLM5VTE12e-55M5VTE1_PRUPE; Uncharacterized protein
STRINGEMJ043314e-56(Prunus persica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G35550.11e-41MYB family protein