PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015889419.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family bHLH
Protein Properties Length: 430aa    MW: 45560.6 Da    PI: 6.5078
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015889419.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.25.3e-122843231155
                     HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH  11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +RRd+iN+++ +L++l+P++      K +Ka++L +++eY+k+Lq
  XP_015889419.1 284 KRRDKINQRMKTLQKLVPNS-----SKTDKASMLDEVIEYLKQLQ 323
                     7******************8.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.291273322IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-15279328IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.15E-13284327No hitNo description
SuperFamilySSF474591.16E-14284334IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-14284333IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.9E-9284323IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009567Biological Processdouble fertilization forming a zygote and endosperm
GO:0009506Cellular Componentplasmodesma
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 430 aa     Download sequence    Send to blast
MSQCVPSWDV DDHSPSAAAR LSFRSQSNST TAPDVPMLDY EVAELTWENG QIAMHGLGPP  60
RVPVKHLSTV TTNSSASKYS WEKPPPGGTL EAIVNQATRL PLPKPPFHDT GGGAATDELV  120
PWFDQYRAAA AAGAAADAMV PCAKGTNNNN NNNNKNNSVD HAAAATIDTG PGGLGTCVVG  180
SSTGVRSRGG AATQDENAVI PEKRARVARV AVAPEWSSRT DPSVSISVSG TFGRDTVDTC  240
ERDVGVDFTS TSHGSPENTS SGVPCTKATT ADDHHSVCHS IAPKRRDKIN QRMKTLQKLV  300
PNSSKTDKAS MLDEVIEYLK QLQAQVQMMS RINMPAVMMP MAVQQQLQMS MMNPMGMGMG  360
MGMGMGMGMG MDMNSIGRTN IPAGISPVLH PAAAAFMPMT TSWDGPSDRL QGTVAPVIPP  420
DPIYIYIILL
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00034PBMTransfer from AT4G00050Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015889419.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024931927.10.0transcription factor UNE10
TrEMBLB9RD581e-151B9RD58_RICCO; DNA binding protein, putative
STRINGXP_002511647.11e-152(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56763347
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00050.14e-31bHLH family protein