PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015889483.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family HD-ZIP
Protein Properties Length: 298aa    MW: 33252.1 Da    PI: 8.291
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015889483.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.93.4e-18126180256
                     T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     rk+ +++keq  +Lee F+++++++ +++  LAk+l+L  rqV vWFqNrRa+ k
  XP_015889483.1 126 RKKLRLSKEQSMVLEETFKEHNTLNPKQKVALAKQLNLRARQVEVWFQNRRARTK 180
                     788899***********************************************98 PP
2HD-ZIP_I/II125.13.1e-40126215191
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                     +kk+rlskeq+ +LEe+F+e+++L+p++Kv+la++L+l++rqv+vWFqnrRARtk+kq+E+d+e+L+r++++l+een+rL+kev+eLr +l
  XP_015889483.1 126 RKKLRLSKEQSMVLEETFKEHNTLNPKQKVALAKQLNLRARQVEVWFQNRRARTKLKQTEVDCEYLRRCCENLTEENRRLQKEVQELR-AL 215
                     69*************************************************************************************9.55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512575118No hitNo description
PfamPF046183.2E-32197IPR006712HD-ZIP protein, N-terminal
Gene3DG3DSA:1.10.10.601.2E-18106180IPR009057Homeodomain-like
SuperFamilySSF466891.07E-18114183IPR009057Homeodomain-like
PROSITE profilePS5007117.119122182IPR001356Homeobox domain
SMARTSM003893.6E-15124186IPR001356Homeobox domain
CDDcd000862.59E-14126183No hitNo description
PfamPF000461.3E-15126180IPR001356Homeobox domain
PROSITE patternPS000270157180IPR017970Homeobox, conserved site
SMARTSM003401.4E-26182225IPR003106Leucine zipper, homeobox-associated
PfamPF021833.2E-11182216IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MGEKDDGLGL ALSLSLGCGR TQPSPNKHNP SPPMQNHKTS WSEIFQFSDR NSDTRSFLRG  60
LDVNRTPSVV ADFEEENGVS SPNSTISSAS GKRSEREPIG EETEGERASC SRESDDEDGN  120
GGDMSRKKLR LSKEQSMVLE ETFKEHNTLN PKQKVALAKQ LNLRARQVEV WFQNRRARTK  180
LKQTEVDCEY LRRCCENLTE ENRRLQKEVQ ELRALKLSPQ MYMHMSPPTT LTMCPSCERV  240
AVSSSSSSTA VAPPSSTFGP TGPNRQPAVP GVQRPVPMNP WATLQMQHRQ TDASSSRS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1124130SRKKLRL
2174182RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015889483.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015889483.10.0homeobox-leucine zipper protein HAT3
SwissprotP466021e-106HAT3_ARATH; Homeobox-leucine zipper protein HAT3
TrEMBLA0A2P5DA951e-143A0A2P5DA95_TREOI; Octamer-binding transcription factor
STRINGXP_006464444.11e-139(Citrus sinensis)
STRINGXP_006445396.11e-139(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF123934105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60390.11e-100homeobox-leucine zipper protein 3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zou LJ, et al.
    Role of Transcription Factor HAT1 in Modulating Arabidopsis thaliana Response to Cucumber mosaic virus.
    Plant Cell Physiol., 2016. 57(9): p. 1879-89
    [PMID:27328697]
  3. Caggiano MP, et al.
    Cell type boundaries organize plant development.
    Elife, 2018.
    [PMID:28895530]