PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015889512.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

FAR1

Protein Properties

Length: 780aa MW: 89527.5 Da PI: 7.4163

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015889512.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	98.9	5.4e-31	82	177	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk......tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fYn+YA++vGFs+r+s s++s+r+g i++r fvC keg+r ++++k + + +r+raetr+gCka+l vk +++g+w+v+ +++eHnHel+ XP_015889512.1 82 FYNSYARRVGFSTRVSMSRRSRRDGAIIQRSFVCAKEGFRVDKHDKqpgpdrDGRVKRPRAETRVGCKAMLAVKIQDSGRWVVSAFVKEHNHELV 176 9**************************************99999899999899999************************************8 PP FAR1 91 p 91 p XP_015889512.1 177 P 177 6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	4.4E-29	82	177	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	2.4E-32	298	390	IPR018289	MULE transposase domain
Pfam	PF04434	1.2E-10	566	612	IPR007527	Zinc finger, SWIM-type
PROSITE profile	PS50966	10.979	578	614	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	9.8E-8	589	616	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 780 aa Download sequence Send to blast
MEFEPLSMAN EVIEFDMMGL GDIEHPVQEY ELLRNSPATA SLAVVPPGSV ASSTEPLIPE 60 GDTNLEPYEG MEFESEEAAK AFYNSYARRV GFSTRVSMSR RSRRDGAIIQ RSFVCAKEGF 120 RVDKHDKQPG PDRDGRVKRP RAETRVGCKA MLAVKIQDSG RWVVSAFVKE HNHELVPPDK 180 VHCLRSHRHV SGAAKSLIDT LQSAGIGPSG IMSALIKEYG GISNVGFTER DCRNYMRSSR 240 QRTLGGDTQH LLDYLRSKQA ENPAFFYAVQ GDEDQCMSNI FWADPKARTN YTYFGDTVTF 300 DTTYRSNRYR LPFAPFTGVN HHGQPVLFGC ALLINESESS FVWLFETWLA AMSGRSPVSI 360 TTDHDRVIRL AVTQVFPESR HRFCKWHIFK ECQEKLSHVL SEHPSFEAEL HKCVNLTESV 420 EEFESCWLSI IDRYDLREHE WLQSVYSNRR QWVPVYLRDA FFAEMSITQR SDSMNSYFDG 480 YVNASTTLQL FVKQYEKALE SRYEKEVKAD YDTINTAPVL KTPSPMEKQA AEFYTRKLFM 540 KFQEELVETL TFLASKVEVE EETSTYQVAK FGESHKAYFV RFNVQEMKVN CSCQMFEFSG 600 LLCRHILTVF RVTNVLTLPS RYILKRWTRN AKSGVVLEER ASDLLNSSRE SLTVRYNNLR 660 QEALKYVDEG VKTVEIYNVA VRALQEAANK VAMVMKNGLK NVTVNGTARE DLFYQGSEVT 720 NTLAEDEQDR KIHKLSRQLE RSRRKCTVYR ANLLSVLKDI EEQKLQLSVK VQNIKLGMKE

Sequence ? help Back to Top

Protein Sequence Length: 780 aa Download sequence Send to blast

MEFEPLSMAN EVIEFDMMGL GDIEHPVQEY ELLRNSPATA SLAVVPPGSV ASSTEPLIPE  60
GDTNLEPYEG MEFESEEAAK AFYNSYARRV GFSTRVSMSR RSRRDGAIIQ RSFVCAKEGF  120
RVDKHDKQPG PDRDGRVKRP RAETRVGCKA MLAVKIQDSG RWVVSAFVKE HNHELVPPDK  180
VHCLRSHRHV SGAAKSLIDT LQSAGIGPSG IMSALIKEYG GISNVGFTER DCRNYMRSSR  240
QRTLGGDTQH LLDYLRSKQA ENPAFFYAVQ GDEDQCMSNI FWADPKARTN YTYFGDTVTF  300
DTTYRSNRYR LPFAPFTGVN HHGQPVLFGC ALLINESESS FVWLFETWLA AMSGRSPVSI  360
TTDHDRVIRL AVTQVFPESR HRFCKWHIFK ECQEKLSHVL SEHPSFEAEL HKCVNLTESV  420
EEFESCWLSI IDRYDLREHE WLQSVYSNRR QWVPVYLRDA FFAEMSITQR SDSMNSYFDG  480
YVNASTTLQL FVKQYEKALE SRYEKEVKAD YDTINTAPVL KTPSPMEKQA AEFYTRKLFM  540
KFQEELVETL TFLASKVEVE EETSTYQVAK FGESHKAYFV RFNVQEMKVN CSCQMFEFSG  600
LLCRHILTVF RVTNVLTLPS RYILKRWTRN AKSGVVLEER ASDLLNSSRE SLTVRYNNLR  660
QEALKYVDEG VKTVEIYNVA VRALQEAANK VAMVMKNGLK NVTVNGTARE DLFYQGSEVT  720
NTLAEDEQDR KIHKLSRQLE RSRRKCTVYR ANLLSVLKDI EEQKLQLSVK VQNIKLGMKE

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015889512.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015889513.1	0.0	protein FAR1-RELATED SEQUENCE 5-like
Swissprot	Q9SZL8	0.0	FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A2N9J6X6	0.0	A0A2N9J6X6_FAGSY; Uncharacterized protein
STRING	EMJ04988	0.0	(Prunus persica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF40	30	530

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	0.0	FAR1-related sequence 5

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]