PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015889551.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

HB-other

Protein Properties

Length: 123aa MW: 13833.6 Da PI: 5.7241

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015889551.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	20.5	8.3e-07	91	116	2	26
T--SS--HHHHHHHHHHHHH.SSS-- CS Homeobox 2 rkRttftkeqleeLeelFek.nryps 26 r+R+t+t+ ql++Le+ F + n +ps XP_015889551.1 91 RQRWTPTPMQLQILEQIFDQgNGTPS 116 89*****************9899998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00046	1.8E-4	91	116	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 123 aa Download sequence Send to blast
MIGWEKQQQE EQERRDNGGN VNGNGVLYVK VMTDEQLETL RKQIAVYATI CEQLVEMHKN 60 LTAQQDLAGV RLGNLYSDPF MTSAGHKITA RQRWTPTPMQ LQILEQIFDQ GNGTPSLLAS 120 SGK

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015889551.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015889551.1	5e-88	WUSCHEL-related homeobox 13
Swissprot	Q5QMM3	5e-50	WOX8_ORYSJ; WUSCHEL-related homeobox 8
TrEMBL	A0A251NDA4	1e-61	A0A251NDA4_PRUPE; Uncharacterized protein
TrEMBL	M5VTE5	4e-62	M5VTE5_PRUPE; Uncharacterized protein (Fragment)
STRING	EMJ04609	7e-63	(Prunus persica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1855	34	93

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35550.1	3e-51	WUSCHEL related homeobox 13

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]