PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015889651.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family DBB
Protein Properties Length: 233aa    MW: 25922.4 Da    PI: 7.3964
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015889651.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box23.61e-07333434
        zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeH 34
                    ++C+ +e+  ++ fC  ++  lC++C ++ H
  XP_015889651.1  3 TICDACESAAAIVFCAADEAALCRSCDEKVH 33
                    68**************************998 PP
2zf-B_box26.51.4e-085291237
        zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg....H 37
                    e ++C+ +e+ ++ ++Ce +++ lC +C +  H g    H
  XP_015889651.1 52 EVPRCDICENAPAFFYCEIDGSSLCLQCDMIVHVGgkrtH 91
                    789***************************9995544455 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.296147IPR000315B-box-type zinc finger
SMARTSM003368.9E-8147IPR000315B-box-type zinc finger
PfamPF006436.5E-6341IPR000315B-box-type zinc finger
CDDcd000212.65E-6345No hitNo description
PROSITE profilePS501198.835196IPR000315B-box-type zinc finger
SMARTSM003362.1E-105196IPR000315B-box-type zinc finger
PfamPF006432.1E-65285IPR000315B-box-type zinc finger
CDDcd000211.02E-65484No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MRTICDACES AAAIVFCAAD EAALCRSCDE KVHMCNKLAS RHVRVGLANP SEVPRCDICE  60
NAPAFFYCEI DGSSLCLQCD MIVHVGGKRT HGRYLVLRQR VEFPGDKPGN LEDPAAQLMD  120
RGESRRGQTQ QPRMTSGEKQ QNHKVSPVPI SETDADGHAK RDNKMIDLNI QPYRMHGQAS  180
NNQFGNTFKS QVNAKVLCSY YILQMDPSDK MHSLLAANYG HDRQNFISST PCI
Functional Description ? help Back to Top
Source Description
UniProtActs as negative regulator of seedling photomorphogenesis. {ECO:0000269|PubMed:18540109}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015889651.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015889651.11e-176B-box zinc finger protein 18-like isoform X1
SwissprotC0SVM58e-74BBX19_ARATH; B-box zinc finger protein 19
TrEMBLA0A1Q3C7341e-109A0A1Q3C734_CEPFO; Zf-B_box domain-containing protein
STRINGXP_008241795.11e-109(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27343370
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38960.13e-76DBB family protein