PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015889653.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

DBB

Protein Properties

Length: 189aa MW: 20922.6 Da PI: 6.8296

Description

DBB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015889653.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	24.1	7.4e-08	3	33	4	34
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeH 34 ++C+ +e+ ++ fC ++ lC++C ++ H XP_015889653.1 3 TICDACESAAAIVFCAADEAALCRSCDEKVH 33 69**************************998 PP
2	zf-B_box	26.9	9.8e-09	52	91	2	37
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeHkg....H 37 e ++C+ +e+ ++ ++Ce +++ lC +C + H g H XP_015889653.1 52 EVPRCDICENAPAFFYCEIDGSSLCLQCDMIVHVGgkrtH 91 789***************************9995544455 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50119	10.296	1	47	IPR000315	B-box-type zinc finger
SMART	SM00336	8.9E-8	1	47	IPR000315	B-box-type zinc finger
CDD	cd00021	4.37E-6	3	45	No hit	No description
Pfam	PF00643	4.6E-6	3	42	IPR000315	B-box-type zinc finger
PROSITE profile	PS50119	8.83	51	96	IPR000315	B-box-type zinc finger
SMART	SM00336	2.1E-10	51	96	IPR000315	B-box-type zinc finger
Pfam	PF00643	1.5E-6	52	90	IPR000315	B-box-type zinc finger
CDD	cd00021	1.42E-6	54	84	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005622	Cellular Component	intracellular
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 189 aa Download sequence Send to blast
MRTICDACES AAAIVFCAAD EAALCRSCDE KVHMCNKLAS RHVRVGLANP SEVPRCDICE 60 NAPAFFYCEI DGSSLCLQCD MIVHVGGKRT HGRYLVLRQR VEFPGDKPGN LEDPAAQLMD 120 RGESRRGQTQ QPRMTSGEKQ QNHKVSPVPI SETDADGHAK RDNKMIDLNI QPYRMHGQAS 180 NNQEGNCFS

Functional Description ? help Back to Top
Source	Description
UniProt	Acts as negative regulator of seedling photomorphogenesis. {ECO:0000269\|PubMed:18540109}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015889653.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015889653.1	1e-140	B-box zinc finger protein 18-like isoform X3
Swissprot	C0SVM5	5e-74	BBX19_ARATH; B-box zinc finger protein 19
TrEMBL	A0A1Q3C734	1e-109	A0A1Q3C734_CEPFO; Zf-B_box domain-containing protein
STRING	EOX90902	1e-110	(Theobroma cacao)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38960.1	2e-76	DBB family protein