PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015889668.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family C3H
Protein Properties Length: 1467aa    MW: 160996 Da    PI: 6.1423
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015889668.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.44.3e-0714441467226
                      -S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH    2 ktelCrffartGtCkyGdrCkFaHg 26  
                      +++ C+ f+++G+Ck G++C++ H+
  XP_015889668.1 1444 GQRVCK-FHESGYCKKGASCSYLHP 1467
                      6789**.*****************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.40.109.5E-9106164IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF579035.76E-8107157IPR011011Zinc finger, FYVE/PHD-type
PROSITE profilePS500168.582110176IPR019787Zinc finger, PHD-finger
SMARTSM002493.7E-7112158IPR001965Zinc finger, PHD-type
CDDcd155681.17E-18112157No hitNo description
PROSITE patternPS013590113173IPR019786Zinc finger, PHD-type, conserved site
SMARTSM001512.8E-4324410IPR019835SWIB domain
Gene3DG3DSA:1.10.245.102.8E-24327408IPR003121SWIB/MDM2 domain
SuperFamilySSF475921.57E-19327405IPR003121SWIB/MDM2 domain
PfamPF022019.2E-13331404IPR003121SWIB/MDM2 domain
PROSITE profilePS5136027.819462595IPR004343Plus-3 domain
SMARTSM007191.1E-45462572IPR004343Plus-3 domain
SuperFamilySSF1590422.22E-32463592IPR004343Plus-3 domain
PfamPF031263.3E-23467570IPR004343Plus-3 domain
SuperFamilySSF552776.28E-16780839IPR003169GYF domain
PROSITE profilePS5082913.619782836IPR003169GYF domain
SMARTSM004441.3E-9783838IPR003169GYF domain
Gene3DG3DSA:3.30.1490.409.7E-17784836IPR003169GYF domain
PfamPF022137.8E-11784827IPR003169GYF domain
PROSITE profilePS5010314.23914421467IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.14E-514421466IPR000571Zinc finger, CCCH-type
PfamPF006421.0E-414441467IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1467 aa     Download sequence    Send to blast
MEQQEEVQGS SLYKPCIEDE EPKDFDQSVQ GLELMSVDQC ETIGDLDDSQ LVGAPLTVAD  60
GCDRMAAGEN GFVVNVEVKL AEKTVEKRRR GRPPRGLVKT TPLRKKKDEE DVCFICFDGG  120
SLVLCDRRGC PKAYHPACIK RDESFFRSKA KWNCGWHICS SCRKASHYMC YTCTYSLCKG  180
CTKDADYLCV RGSKGLCGTC MRTVMLIENL QGCTEMAKVD FDDKSSWEYL FKVYWIFLKR  240
KLSLTLDELI RAKNPWKGPP VIASKGQCSS GFYYGSNKNS ISGNSYADLE VINLKRKTTK  300
KPNALSEEDC LGIGKLGGGR VTFSGDTIWA SKALLEFVAH MKNGDTSILS QFDVQALLLE  360
YIKRNNLRDP RRKCQIICDS RLLNLFGKAC VGHIEMLKLL ESHFLIKEGP RADNSIQDGC  420
VDAVCSHGNS DSHTMMVNDK KRKTRKRVDE QRQQTNPDAY AAIDVHNINL IFLRRNLVEN  480
LIDDADKFHD KVVGSFVRIK ISSGDQKQDM HRLVQVVGTS KVMEPYNVGT KTTDLMLEIS  540
NLNKKEVISI DGISNQEFDQ DDCKRLRQSI KCGLIKRLTV GEIQEKAVTL QAAKVNDWLE  600
AEVLRLNHLR DRASEKGHRK ELKECVEKLQ LLNSPEERQR RLQEFPVVHS DPNMDPNCES  660
EDNDGEIDEN KKDNKVKPRN SSFGRKRREP VSPRSGADGL ITSGSKAQKT LATPPEQKRG  720
KEKIGSNGCK TAINQANHSD PAICGRSTQA TVGSDTFSGA AAESTGVLSA GMNQSVNDFE  780
TDKIWHYQDP SGKIQGPFNM LQLRKWSATR LFPSDLRIWK LQEKQDDAIL LTEVLNVHNC  840
QEPLLRSNSH LPSEGIGVAS DRKDNGRDRG WNKSMNSTPV DGKRVEESTN FEQDDPSKHK  900
DENSEPMRSN GWGPLSSSCT TLADVNSNEE HTGIFPQGWD SFKENNAWPN QPQVCSSLPT  960
PVFPVNQTSS HHVREGHESE KTSDQNNENL NAHQTAEGHT NNGRGCENQS DSEGHSGQSS  1020
SQNWRPPPVN GPSNGWDSNA GFTSVAKSLE TSEQNKEEID FPDFPSPTRK QGNGDLECQA  1080
AENRQSASPN APVQDAGLSW STASSLIGGG TQLHEVAGEW GGYSSTPAKP SVEEWESSIV  1140
SVSSLKPTEM ASDHAGTPAS ISEQLTHSSP SHPASSTSGW HAIVAEPNEF SSLADESVSD  1200
LLAEVEAMES LKDMASSPTI INCGGELTEG SKNDCLSSVE GFSPPPDPGK GDALSSTGDI  1260
HLPPRSTMSD EPLGVGKADV RDPQNRSNGH SATSVEVEGD AKHSDVSVNQ WEVQPAAPST  1320
AGWDVAAIDT TWNARSESAN TDWGAVQGNP SIGWGGLDQG SAVMAWGAGQ GTAQENSNTN  1380
SGTGTPTGNI WGSQPRYGGE RYFGPRDRIF QGRDSGYGRG RHVWNRQQFG GGNGGGPFRP  1440
PSKGQRVCKF HESGYCKKGA SCSYLHP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4gnd_A1e-1398179681Histone-lysine N-methyltransferase NSD3
4gnd_C1e-1398179681Histone-lysine N-methyltransferase NSD3
4gne_A1e-1398179681Histone-lysine N-methyltransferase NSD3
4gnf_A1e-1398179681Histone-lysine N-methyltransferase NSD3
4gng_A1e-1398179681Histone-lysine N-methyltransferase NSD3
4gng_D1e-1398179681Histone-lysine N-methyltransferase NSD3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
187106RRRGRPPRGLVKTTPLRKKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015889668.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015889668.10.0zinc finger CCCH domain-containing protein 44 isoform X1
SwissprotQ9SD340.0C3H44_ARATH; Zinc finger CCCH domain-containing protein 44
TrEMBLA0A2P5FNZ70.0A0A2P5FNZ7_TREOI; p53 negative regulator
STRINGXP_008241786.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14351523
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G51120.10.0DNA binding;zinc ion binding;nucleic acid binding;nucleic acid binding