PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015889702.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

C3H

Protein Properties

Length: 492aa MW: 53465.2 Da PI: 9.3816

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015889702.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	20.7	7.4e-07	440	461	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C +f t C+ G +C+F H+ XP_015889702.1 440 PCIYFKTTKGCRNGINCPFQHD 461 8********************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	13.197	435	463	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	4.1E-4	439	461	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.5E-4	439	461	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 492 aa Download sequence Send to blast
MRMNMKRSRI SKRVSWAPGV NLCQVKLFSC DDCPLKVGMI SKDHLEAKSS KMLHSNTMGS 60 DGLPPGFENG FVAVSQSRTE LPLIPQIQWK CPPKIVMSNN WQVASGEESE EVKHQKSREL 120 GVLEAVFPRF SAIPPSPAVS LDVQNENYND NGTPLVPIIP IEEEESIYTP YIPAPVNTTT 180 SSQPLDLSGS RLRSEMLNTA NCNSSAPEPL SSAQPALGKL LPGLGADAVA SASAALAVVN 240 TVGQNGSMID TDLLIKILAD PKMIQKLISE GPPAGTGSAP KNMVSPHLTG TNTVTQSAPM 300 SFPTIPDNRV QTVLNTVPFQ PDTLPVSGFN RTTPSSVPAP ILESHRQLMP GLPNGNLFAI 360 PNRVRSSAKT VSVKPNTAPI ATLTKDANYY KNLIRAHGGE KDKTEESIFS RKRNHHNDFQ 420 ELKLDQNVRQ GELKLKNAKP CIYFKTTKGC RNGINCPFQH DMPIQWRTGS LIEAHGAKRM 480 RLGGETAGRF LL

Sequence ? help Back to Top

Protein Sequence Length: 492 aa Download sequence Send to blast

MRMNMKRSRI SKRVSWAPGV NLCQVKLFSC DDCPLKVGMI SKDHLEAKSS KMLHSNTMGS  60
DGLPPGFENG FVAVSQSRTE LPLIPQIQWK CPPKIVMSNN WQVASGEESE EVKHQKSREL  120
GVLEAVFPRF SAIPPSPAVS LDVQNENYND NGTPLVPIIP IEEEESIYTP YIPAPVNTTT  180
SSQPLDLSGS RLRSEMLNTA NCNSSAPEPL SSAQPALGKL LPGLGADAVA SASAALAVVN  240
TVGQNGSMID TDLLIKILAD PKMIQKLISE GPPAGTGSAP KNMVSPHLTG TNTVTQSAPM  300
SFPTIPDNRV QTVLNTVPFQ PDTLPVSGFN RTTPSSVPAP ILESHRQLMP GLPNGNLFAI  360
PNRVRSSAKT VSVKPNTAPI ATLTKDANYY KNLIRAHGGE KDKTEESIFS RKRNHHNDFQ  420
ELKLDQNVRQ GELKLKNAKP CIYFKTTKGC RNGINCPFQH DMPIQWRTGS LIEAHGAKRM  480
RLGGETAGRF LL

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015889702.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015889702.1	0.0	zinc finger CCCH domain-containing protein 30
TrEMBL	A0A2P5ARI5	1e-161	A0A2P5ARI5_PARAD; Zinc finger, CCCH-type
STRING	XP_010113371.1	1e-136	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF8683	7	9