PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015889872.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

bHLH

Protein Properties

Length: 432aa MW: 47778 Da PI: 7.6242

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015889872.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	12.5	0.00027	333	371	11	54
HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R +++ ++++ L +l+ + +K + a++L++A+ YI+ L XP_015889872.1 333 IRKEKLGDRIASLHRLVAPF-----GKTDTASVLTEAIGYIQFL 371 57778889999999999998.....8****************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.75	322	371	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.14E-4	332	376	No hit	No description
SuperFamily	SSF47459	7.33E-10	332	383	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	5.3E-7	333	379	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 432 aa Download sequence Send to blast
MEYSNHHSQH QLQDQLVNAP TSSLPTLPTC TLLQSTSTAN KYSTSSKIIL NSTSSGNNDY 60 NQLTEANIPY SRAWSPHDHH HDFISYHNDN TRSFNQLQYS PNLELLLPLS NIKEENSDSF 120 SKLSERISDP LEIVDRLNHL STSYKQNINI PPPCDMVDNT WLNDSSISSA GCQKFSAGDQ 180 VPYFNTTTGT TFGGFTGVAA LNLRYDMSDT FPVSTTNYKG LSDSLCSSSS SSLGLNFQGL 240 DLLSSTSYPC RQSASHVNLG LYERSGPLGH DDHQDVQKSK DSPSSNSSSI TSAFKNEVSR 300 TKRPSNSGNI SEPKASQSAT KKSRPSNPPP LKIRKEKLGD RIASLHRLVA PFGKTDTASV 360 LTEAIGYIQF LHDQVQTLSL PYMKSLQSKL SRKMQQGLRK EEEKEKETKL ELRSRGLCLV 420 PISCVSYISG YD

Sequence ? help Back to Top

Protein Sequence Length: 432 aa Download sequence Send to blast

MEYSNHHSQH QLQDQLVNAP TSSLPTLPTC TLLQSTSTAN KYSTSSKIIL NSTSSGNNDY  60
NQLTEANIPY SRAWSPHDHH HDFISYHNDN TRSFNQLQYS PNLELLLPLS NIKEENSDSF  120
SKLSERISDP LEIVDRLNHL STSYKQNINI PPPCDMVDNT WLNDSSISSA GCQKFSAGDQ  180
VPYFNTTTGT TFGGFTGVAA LNLRYDMSDT FPVSTTNYKG LSDSLCSSSS SSLGLNFQGL  240
DLLSSTSYPC RQSASHVNLG LYERSGPLGH DDHQDVQKSK DSPSSNSSSI TSAFKNEVSR  300
TKRPSNSGNI SEPKASQSAT KKSRPSNPPP LKIRKEKLGD RIASLHRLVA PFGKTDTASV  360
LTEAIGYIQF LHDQVQTLSL PYMKSLQSKL SRKMQQGLRK EEEKEKETKL ELRSRGLCLV  420
PISCVSYISG YD

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015889872.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015889872.1	0.0	transcription factor bHLH110-like isoform X2
Refseq	XP_015889971.1	0.0	transcription factor bHLH110-like isoform X2
TrEMBL	A0A2P5FP63	3e-72	A0A2P5FP63_TREOI; Myc-type, basic helix-loop-helix (BHLH) domain containing protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4045	32	54

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G27660.1	9e-33	bHLH family protein