PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015890065.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

Protein Properties

Length: 181aa MW: 20796 Da PI: 10.6201

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015890065.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	46.3	7.7e-15	86	173	17	98
E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE......EEE-TTHHHHHHHHT--TT-EEEEEE-..SSSEE..EEEEE- CS B3 17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr......yvltkGWkeFvkangLkegDfvvFkld..grsefelvvkvfr 98 +pkkfa+++ +kke+ tl ++gr+W+v+++ r ks++ + ++GW+ F+++n+L++ D+++F+l+ g++ ++v+++r XP_015890065.1 86 FIPKKFAKRYINKKEG--VFTLWISEGRTWSVQYKTRIKSDSgqeiteISDRGGWNAFARDNNLEVIDVCIFELItsGNDISDFRVSIIR 173 79******767666..58888899****996666666455444445*******************87433344444777766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	1.7E-16	68	174	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	1.79E-15	82	174	IPR015300	DNA-binding pseudobarrel domain
Pfam	PF02362	8.9E-13	86	174	IPR003340	B3 DNA binding domain
CDD	cd10017	3.11E-15	87	173	No hit	No description
PROSITE profile	PS50863	11.491	87	175	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 181 aa Download sequence Send to blast
MMLSYCKRNR TVPSVLFLLS SLTLTRISSN NLRKNDVYDI GEKSSLQCLR PHKRMKTSSP 60 NSKVVGKKKQ HFLSSIEKAR AVEVAFIPKK FAKRYINKKE GVFTLWISEG RTWSVQYKTR 120 IKSDSGQEIT EISDRGGWNA FARDNNLEVI DVCIFELITS GNDISDFRVS IIRRHDHISP 180 V

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015890065.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015890065.1	1e-132	B3 domain-containing protein Os11g0197600-like

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF17542	3	6