PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015890123.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

Protein Properties

Length: 481aa MW: 53688.1 Da PI: 6.631

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015890123.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	62.4	7.1e-20	119	208	1	98
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 f+k l++s+v + ++ lp f+++h + +++t+tledesg++++ k+i k++ l++GW++F+ a++L egD++vF+l++ ++f +v XP_015890123.1 119 FVKSLVRSHVASCFWMGLPGLFCKTHLPD--KDVTITLEDESGKQYQSKYIAYKTG----LSAGWRQFAAAHNLLEGDVLVFQLVEPTKF--KVY 205 89**********************533..689************666665....9********************9876666..888 PP EE- CS B3 96 vfr 98 ++r XP_015890123.1 206 IIR 208 887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	2.75E-24	113	210	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	1.1E-21	113	210	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	2.35E-27	117	208	No hit	No description
PROSITE profile	PS50863	13.507	119	210	IPR003340	B3 DNA binding domain
SMART	SM01019	3.2E-23	119	210	IPR003340	B3 DNA binding domain
Pfam	PF02362	2.7E-17	119	208	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 481 aa Download sequence Send to blast
MVRGVVVEGR EKEDQLTASY YEEGDVTLAQ LSRSPKTKPK PTPPSSSSPS VKQKKPNVED 60 EKFSKMKKAA SGHSGKVLSS KQNMATINGS CTLSGEAKSS AVIRAQEVRS NLGPEYPSFV 120 KSLVRSHVAS CFWMGLPGLF CKTHLPDKDV TITLEDESGK QYQSKYIAYK TGLSAGWRQF 180 AAAHNLLEGD VLVFQLVEPT KFKVYIIRPN DLTEVDGALG LLNLDAHICQ DDEDKDDAEM 240 DANTNRKRMK SLPLAVVEKK KKKTGQSTWA PKAAEQSEND SEEVGSEVYE GSKLSRPAVQ 300 FKDVKSFENF SILVDGFLID SELPEDIRQM YYKLCCSQNA FLHEHLIKGI NYKLIVGIIY 360 ETVNIANAIK SCKLATSWND FAAWEKSLKA FELLGMNVGF LRARLCRLAN LACESEDSVV 420 VKRFIDAETE RSQAKSGIRN IERKLEELKE ACDTFGVAIE NLRSQAEIDE LKFQEQVNVP 480 W

Sequence ? help Back to Top

Protein Sequence Length: 481 aa Download sequence Send to blast

MVRGVVVEGR EKEDQLTASY YEEGDVTLAQ LSRSPKTKPK PTPPSSSSPS VKQKKPNVED  60
EKFSKMKKAA SGHSGKVLSS KQNMATINGS CTLSGEAKSS AVIRAQEVRS NLGPEYPSFV  120
KSLVRSHVAS CFWMGLPGLF CKTHLPDKDV TITLEDESGK QYQSKYIAYK TGLSAGWRQF  180
AAAHNLLEGD VLVFQLVEPT KFKVYIIRPN DLTEVDGALG LLNLDAHICQ DDEDKDDAEM  240
DANTNRKRMK SLPLAVVEKK KKKTGQSTWA PKAAEQSEND SEEVGSEVYE GSKLSRPAVQ  300
FKDVKSFENF SILVDGFLID SELPEDIRQM YYKLCCSQNA FLHEHLIKGI NYKLIVGIIY  360
ETVNIANAIK SCKLATSWND FAAWEKSLKA FELLGMNVGF LRARLCRLAN LACESEDSVV  420
VKRFIDAETE RSQAKSGIRN IERKLEELKE ACDTFGVAIE NLRSQAEIDE LKFQEQVNVP  480
W

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	245	262	RKRMKSLPLAVVEKKKKK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015890123.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015890123.1	0.0	B3 domain-containing protein Os01g0234100-like isoform X3
TrEMBL	A0A2P5FYB6	0.0	A0A2P5FYB6_TREOI; B3 DNA binding domain containing protein
STRING	XP_010094372.1	0.0	(Morus notabilis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G42700.1	6e-38	B3 family protein