PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015890142.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family ERF
Protein Properties Length: 255aa    MW: 29139.7 Da    PI: 7.7679
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015890142.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.25.5e-20134182355
             AP2   3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     y+GVr+++ +g+W+AeIrdp+    r +r++lg+f tae+Aa+a+++a+ +++g
  XP_015890142.1 134 YRGVRQRP-WGKWAAEIRDPR----RaARVWLGTFETAEQAARAYDKAAIEFRG 182
                     9*******.**********82....48************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.9E-38133196IPR001471AP2/ERF domain
SuperFamilySSF541711.37E-22133192IPR016177DNA-binding domain
CDDcd000185.00E-35133192No hitNo description
PROSITE profilePS5103225.449133190IPR001471AP2/ERF domain
PfamPF008475.5E-14133182IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.6E-33133191IPR001471AP2/ERF domain
PRINTSPR003673.8E-12134145IPR001471AP2/ERF domain
PRINTSPR003673.8E-12156172IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MFSNHPKTQT NNLTNMPFPF IRIINDQEHS IMVSALKHEI SGGMDGPTLE EFQLLEAVHN  60
AMSSLPSTSG TNYDQKDQQQ QVTLSFPDGD ICPFCNINGC LGCNFFSTAD CNDGKRGGSK  120
TTASEAKRRK KNNYRGVRQR PWGKWAAEIR DPRRAARVWL GTFETAEQAA RAYDKAAIEF  180
RGARAKLNFP LSDYHDEKQS TTDKDMDTES QNKKKSKKKK KTLMEVEDNR CKEENEFWET  240
LKEEEECMRL MGFTV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-25133191261ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015890142.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015890142.10.0ethylene-responsive transcription factor ERF109-like
TrEMBLA0A2P5ATD72e-65A0A2P5ATD7_PARAD; AP2/ERF transcription factor
STRINGEMJ053713e-66(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF29623072
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33710.14e-33ERF family protein