PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015890148.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family HSF
Protein Properties Length: 295aa    MW: 32977.9 Da    PI: 6.3207
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015890148.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind119.12.6e-37101022103
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Fl+k+y++++d+ ++++isw+eng+sfvv+++ +fa+++Lp+yFkh+nf+SFvRQLn+YgF+kv  ++         weF++++F++g+kell++
  XP_015890148.1  10 FLTKTYQLVDDPVTDDVISWNENGTSFVVWKTADFARDLLPNYFKHNNFSSFVRQLNTYGFRKVVPDK---------WEFANDHFRRGQKELLSE 95 
                     9****************************************************************999.........****************** PP

                     XXXXXXX CS
    HSF_DNA-bind  97 ikrkkse 103
                     i+r+k++
  XP_015890148.1  96 IRRRKTA 102
                     ****975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.6E-38393IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.1E-61699IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467854.35E-34799IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.9E-321099IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.7E-211033IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.7E-214860IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043404973IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.7E-216173IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009408Biological Processresponse to heat
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MAQRSVPAPF LTKTYQLVDD PVTDDVISWN ENGTSFVVWK TADFARDLLP NYFKHNNFSS  60
FVRQLNTYGF RKVVPDKWEF ANDHFRRGQK ELLSEIRRRK TATTSPANGQ AGKPGGGDCP  120
SSPSNSGEDL GSTSTSSTDP KNPGSVETAA AMVQVAGLSD ENEKLKKDNE ILSSELAQTK  180
KQCDELIAFL TEYMKVGPDQ INRIMRQGSC GSTRDGLADD DDDDENGFEK EEKEKEGLKL  240
FGVWVKGNDN DKEKTMIKKK RSREEKTVGF VLPHAKEMKT VDFRTPLMKS SKVCN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A5e-27510416125Heat shock factor protein 1
5d5u_B7e-27510125131Heat shock factor protein 1
5d5v_B7e-27510125131Heat shock factor protein 1
5d5v_D7e-27510125131Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtDNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015890148.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015890148.10.0heat shock factor protein HSF24
SwissprotP223351e-110HSF24_SOLPE; Heat shock factor protein HSF24
TrEMBLA0A061DGX91e-146A0A061DGX9_THECC; Heat shock factor 4
TrEMBLA0A1R3GF981e-146A0A1R3GF98_COCAP; Heat shock factor (HSF)-type, DNA-binding protein
STRINGEOX914071e-146(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71143247
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36990.15e-94heat shock factor 4
Publications ? help Back to Top
  1. Scharf KD, et al.
    Three tomato genes code for heat stress transcription factors with a region of remarkable homology to the DNA-binding domain of the yeast HSF.
    EMBO J., 1990. 9(13): p. 4495-501
    [PMID:2148291]