PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015890152.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family B3
Protein Properties Length: 192aa    MW: 21902.1 Da    PI: 9.5299
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015890152.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B331.14e-103097172
                    EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHH CS
              B3  1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkan 72
                    ffkv ++s    ++ l lpkkf +e+g++   s   t++ ++gr+W++ l  +k+ ++ ++++++W+eFv+  
  XP_015890152.1 30 FFKVILRSTIDDQK-LKLPKKFGREFGND--LSAVATITVPNGRTWQLGL--QKTEEGrVLFADCWQEFVEYL 97
                    78888787777776.***********988..88899999***********..5554444***********865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.73E-1226101IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.5E-122799IPR015300DNA-binding pseudobarrel domain
CDDcd100171.23E-929101No hitNo description
PfamPF023622.1E-73097IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MAAKRKGCLG NIGPSSGRMR GSNISPPVHF FKVILRSTID DQKLKLPKKF GREFGNDLSA  60
VATITVPNGR TWQLGLQKTE EGRVLFADCW QEFVEYLHVK PPHCDKDSAE KVEDDDDDDD  120
DDVDELMFVS RRFGSKNSKQ RKRAIHAARS CKPTRPSFMI SLLQTRTNKY LRVPVEFAKK  180
YMRSCSKLET CD
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015890152.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024932663.13e-67B3 domain-containing transcription factor VRN1-like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.11e-14B3 family protein