PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015890191.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family HD-ZIP
Protein Properties Length: 215aa    MW: 24524.6 Da    PI: 6.8118
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015890191.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox603.8e-1957110457
                     -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
        Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                     ++++++eq++ Le  F +++++  e++ +LA++lgL+ rqV vWFqNrRa++k+
  XP_015890191.1  57 KRKLSTEQVNLLELNFGSEHKLESERKDRLASELGLDPRQVAVWFQNRRARWKN 110
                     56899***********************************************95 PP
2HD-ZIP_I/II121.64.1e-3956147293
     HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                     kkr+ls+eqv+lLE +F +e+kLe+erK +la+eLgl+prqvavWFqnrRAR+k+k+lE++y++Lk+a+da+  e+++Le+ev +L+e+l+e
  XP_015890191.1  56 KKRKLSTEQVNLLELNFGSEHKLESERKDRLASELGLDPRQVAVWFQNRRARWKNKKLEEEYSTLKKAHDAVIVEKCSLESEVLKLKEQLSE 147
                     9****************************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003893.5E-1754115IPR001356Homeobox domain
SuperFamilySSF466896.68E-1855120IPR009057Homeodomain-like
PROSITE profilePS5007116.27756111IPR001356Homeobox domain
PfamPF000463.3E-1657110IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.606.4E-2058118IPR009057Homeodomain-like
CDDcd000862.83E-1458112No hitNo description
PRINTSPR000311.4E-58291IPR000047Helix-turn-helix motif
PROSITE patternPS00027086109IPR017970Homeobox, conserved site
PRINTSPR000311.4E-591107IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MTTSMTNRVE DDLALISQLY PAGVYSQMVP QQAESSKPRR RRKKNKGGEA GGGGLKKRKL  60
STEQVNLLEL NFGSEHKLES ERKDRLASEL GLDPRQVAVW FQNRRARWKN KKLEEEYSTL  120
KKAHDAVIVE KCSLESEVLK LKEQLSEAEK DIQRLSERRV DSGSSNSPSS SLSMEAIDPP  180
FLGGYGLEGY DDDVFYTQEN NYIHGIEWMT MNLYM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13957RRRKKNKGGEAGGGGLKKR
24158RKKNKGGEAGGGGLKKRK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00473DAPTransfer from AT4G36740Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015890191.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015890191.11e-159homeobox-leucine zipper protein ATHB-40
SwissprotO232084e-75ATB40_ARATH; Homeobox-leucine zipper protein ATHB-40
TrEMBLA0A2P5FXR93e-94A0A2P5FXR9_TREOI; Octamer-binding transcription factor
STRINGXP_009374234.18e-94(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47893257
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36740.15e-58homeobox protein 40
Publications ? help Back to Top
  1. González-Grandío E, et al.
    Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254
    [PMID:28028241]