PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015890312.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

LBD

Protein Properties

Length: 238aa MW: 25727.2 Da PI: 8.2671

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015890312.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	100.7	1.4e-31	2	103	1	97
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +C++C+vlr++C+++C+l+p++ p++q +++ +v+k+FG++ ++++++a+pe++r+++++sl++eA+ r+ +Pv+Gavg++++++++++q+ XP_015890312.1 2 SCNGCRVLRKGCSESCILRPCLqwietPEAQGHATVFVAKFFGRAGLMSFISAVPESQRPALFQSLLFEACGRTVNPVNGAVGLLWTGNWHVCQA 96 6********************************************************************************************** PP DUF260 91 kaelall 97 ++e++l+ XP_015890312.1 97 AVETVLR 103 *998876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	19.939	1	107	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	9.0E-27	2	101	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 238 aa Download sequence Send to blast
MSCNGCRVLR KGCSESCILR PCLQWIETPE AQGHATVFVA KFFGRAGLMS FISAVPESQR 60 PALFQSLLFE ACGRTVNPVN GAVGLLWTGN WHVCQAAVET VLRGGTLRPM PELLVGNGGG 120 GAPTPASDEA SEAEVTCTDM WKLRDPNSNS RFSNSRSRNS PKRKRSDEPA KLQLQNPADL 180 DLRLTPTFPG KISVCKAELR RAGSPNSEES VTTTCFESGL ADQQNANGGE RKLLNLFT

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015890312.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015890312.1	1e-175	LOB domain-containing protein 38
Swissprot	Q9SN23	2e-92	LBD38_ARATH; LOB domain-containing protein 38
TrEMBL	A0A2P5FSF3	1e-136	A0A2P5FSF3_TREOI; Lateral organ boundaries domain containing protein
STRING	cassava4.1_014772m	1e-132	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF721	34	136

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G49940.1	1e-89	LOB domain-containing protein 38