PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015890377.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family bHLH
Protein Properties Length: 247aa    MW: 28332 Da    PI: 9.8354
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015890377.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.23.5e-14144190455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      h ++Er+RR+++N+ f  L +++P +     kK +K+++L ++++YIk+Lq
  XP_015890377.1 144 DHVIAERKRRENLNKLFIALSTIVPGL-----KKTDKSSVLGETIKYIKQLQ 190
                     699************************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.821140189IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-16144201IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.22E-16144204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.6E-12144190IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.63E-11145194No hitNo description
SMARTSM003531.3E-14146195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MEDSILTDDY EQSTELMIAA FVEGLQQTLS SESNSSSPTL DIKNSDSTVN AYMEDQRRLK  60
QRRTTMEHKN SEPLILSFNN PDFLRNSEYN KEDIAGFSRD LSSSSPVFQY SKHPFHANQE  120
DEIIFGQWSK NTTSTTKPAS QLRDHVIAER KRRENLNKLF IALSTIVPGL KKTDKSSVLG  180
ETIKYIKQLQ EKEKKLEVQS RKKAIEQVVI VRKSKMTTRK SGFHISKLKC PETMSCSGSI  240
ARNRREF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15562QRRLKQRR
2148153ERKRRE
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015890377.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024932363.11e-149transcription factor bHLH19
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.14e-18bHLH family protein