PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015890414.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family M-type_MADS
Protein Properties Length: 197aa    MW: 21432.4 Da    PI: 9.0467
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015890414.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF23.19.8e-082056945
                    HHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
          SRF-TF  9 rqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                    r v  s+ + g+ K A E+++LC++e  ++++s+ g+
  XP_015890414.1 20 RRVAVSRPQSGLSKNACEVCTLCAVETTLVVLSPGGQ 56
                    788999999************************9886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006611.914464IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.02E-9476IPR002100Transcription factor, MADS-box
PfamPF003192.9E-61858IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MAGMGSKKTQ KKTTRGTDAR RVAVSRPQSG LSKNACEVCT LCAVETTLVV LSPGGQAFPS  60
GHPCADSGTN RLYRHVKIDA EIIRDFEVRQ EAVLHKLSKE CAHLHYQIEA EKKRGEKLKQ  120
MQVENPVPYL LDAPIESLNR QELYTLKAMV EEVKEKVVKR RNELVAQAST PSSAADCPGT  180
DPVGGNSSAG PRGHLGN
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015890414.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015890412.11e-145agamous-like MADS-box protein AGL29 isoform X2
RefseqXP_015890413.11e-145agamous-like MADS-box protein AGL29 isoform X2
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34440.11e-17AGAMOUS-like 29