PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015890524.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family MIKC_MADS
Protein Properties Length: 225aa    MW: 25791.7 Da    PI: 9.8846
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015890524.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF85.63e-271059251
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    ri+n++ rqvtfskRr+g++KKA+EL +LCdaev ++ifsstgklye++s
  XP_015890524.1 10 RIDNSTSRQVTFSKRRKGLIKKAKELAILCDAEVGLVIFSSTGKLYEFAS 59
                    8***********************************************86 PP
2K-box81.61.9e-2781170998
           K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                     + +++   +q+e+a L+ +++nLq+++R+l+G++L  L +k+Lq++e++Le slk iR kK++ll+++i+e  +k   ++een++L+kk+
  XP_015890524.1  81 NPASEVTFWQREAAILRHQLQNLQENHRQLMGQELYGLGVKDLQNIENRLEISLKGIRMKKEQLLTDEIQEINQKGSLIHEENMELHKKI 170
                     5678899*********************************************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.0E-38160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.497161IPR002100Transcription factor, MADS-box
CDDcd002651.17E-43278No hitNo description
SuperFamilySSF554552.09E-32291IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004044.6E-28323IPR002100Transcription factor, MADS-box
PfamPF003192.7E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004044.6E-282338IPR002100Transcription factor, MADS-box
PRINTSPR004044.6E-283859IPR002100Transcription factor, MADS-box
PfamPF014863.0E-2484170IPR002487Transcription factor, K-box
PROSITE profilePS5129714.31186176IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008134Molecular Functiontranscription factor binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MGRGKIVIRR IDNSTSRQVT FSKRRKGLIK KAKELAILCD AEVGLVIFSS TGKLYEFAST  60
SMKSVIEKYL KSKEEHQQLL NPASEVTFWQ REAAILRHQL QNLQENHRQL MGQELYGLGV  120
KDLQNIENRL EISLKGIRMK KEQLLTDEIQ EINQKGSLIH EENMELHKKI IAIRQENMEL  180
YKKLYGTRDM DPASQNTLNI PFAISSTSGE VSNVPVQLQL SQPSQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A4e-23181181MEF2C
5f28_B4e-23181181MEF2C
5f28_C4e-23181181MEF2C
5f28_D4e-23181181MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015890524.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015890524.11e-164MADS-box transcription factor 23
SwissprotQ6EP491e-102MAD27_ORYSJ; MADS-box transcription factor 27
TrEMBLD7T5C51e-120D7T5C5_VITVI; Uncharacterized protein
STRINGVIT_00s0211g00180.t011e-121(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF8912560
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37940.11e-103AGAMOUS-like 21
Publications ? help Back to Top
  1. Puig J, et al.
    Analysis of the expression of the AGL17-like clade of MADS-box transcription factors in rice.
    Gene Expr. Patterns, 2013 Jun-Jul. 13(5-6): p. 160-70
    [PMID:23466806]
  2. Yu C, et al.
    The effects of fluctuations in the nutrient supply on the expression of five members of the AGL17 clade of MADS-box genes in rice.
    PLoS ONE, 2014. 9(8): p. e105597
    [PMID:25140876]