PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015890632.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

CAMTA

Protein Properties

Length: 1073aa MW: 120756 Da PI: 5.5852

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015890632.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	179.2	4.9e-56	20	136	2	118
CG-1 2 lkekkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqr 96 ++ ++rwl++ ei++iL n+++++++ e+++ p+sgsl+L++rk++ryfrkDG++w+kkkdgktv+E+he+LK g+++vl+cyYah+e+n++fqr XP_015890632.1 20 MEAQHRWLRPAEICEILRNYKRFRIAPEPANMPPSGSLFLFDRKVLRYFRKDGHNWRKKKDGKTVKEAHERLKAGSIDVLHCYYAHGEDNENFQR 114 5569***************************************************************************************** PP CG-1 97 rcywlLeeelekivlvhylevk 118 r+yw+Lee+l++ivlvhy+evk XP_015890632.1 115 RSYWMLEEDLSHIVLVHYREVK 136 *****************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51437	82.891	15	141	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	2.7E-79	18	136	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	3.5E-49	21	134	IPR005559	CG-1 DNA-binding domain
Gene3D	G3DSA:2.60.40.10	1.7E-6	489	575	IPR013783	Immunoglobulin-like fold
SuperFamily	SSF81296	5.91E-19	490	575	IPR014756	Immunoglobulin E-set
Pfam	PF01833	3.0E-8	490	574	IPR002909	IPT domain
PROSITE profile	PS50297	17.29	655	795	IPR020683	Ankyrin repeat-containing domain
SuperFamily	SSF48403	2.8E-15	674	785	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	3.33E-11	682	783	No hit	No description
Gene3D	G3DSA:1.25.40.20	1.4E-15	684	789	IPR020683	Ankyrin repeat-containing domain
SMART	SM00248	0.032	723	752	IPR002110	Ankyrin repeat
PROSITE profile	PS50088	9.217	723	755	IPR002110	Ankyrin repeat
SMART	SM00248	2200	763	792	IPR002110	Ankyrin repeat
SuperFamily	SSF52540	1.14E-7	891	949	IPR027417	P-loop containing nucleoside triphosphate hydrolase
SMART	SM00015	16	898	920	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	7.144	900	928	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	0.066	901	919	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	0.0039	921	943	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	9.487	922	946	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	2.2E-4	924	943	IPR000048	IQ motif, EF-hand binding site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009409	Biological Process	response to cold
GO:0010150	Biological Process	leaf senescence
GO:0042742	Biological Process	defense response to bacterium
GO:0050832	Biological Process	defense response to fungus
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0005516	Molecular Function	calmodulin binding

Sequence ? help Back to Top
Protein Sequence Length: 1073 aa Download sequence Send to blast
MAESRRYGLG NQLDIEQILM EAQHRWLRPA EICEILRNYK RFRIAPEPAN MPPSGSLFLF 60 DRKVLRYFRK DGHNWRKKKD GKTVKEAHER LKAGSIDVLH CYYAHGEDNE NFQRRSYWML 120 EEDLSHIVLV HYREVKGNRT SFNRIRENED AETAPNSEID SSFSSSFPPN SYQISQTTDT 180 TSLNSAQASE YEDAESAYNQ ASSTLHSFLE LQRPMAEQIN SGLSDPYYPM MFSNDYQGKS 240 SAIPGIDISS LPQTDINEGS KSVGVTYEPR KNLDFPLRKN ILVNTSAGTQ SLPLQPSLSA 300 IQSENLGIVQ KQEQENFGQL FSEGIGQRLE FGSQPQVQEE WQASGGHSSS LSKWPADQNL 360 HQDAASNLAS ERETNGVELL QSQHPNTQHE YDLKSVQENN VFLEGKPNYI SGIKQSLLDS 420 SFTDEGLKKL DSFNRWMSKE LGDVNESHMQ TSSEAYWDTV EAENADGDSS QVRLDTYMLG 480 PSLSQDQLFT IIDFSPNWAF EDSEVKVLIT GRFLDHQAES SKWSCMFGEV EVPAEVIADG 540 VLRCHTPIHK AGRVPFYVTC SNRLACSEVR EFEYRVNEVR DMDLKYDDSS CTTEELNLRF 600 GKLLCLDSAC PTSGPNNLVE KSQLSSKISL LLREDEDEWD QMLKLTSENN FSVERVEEQL 660 HQKLLKGKLH GWLLQKVAEG GKGASVLDEG GQGVLHFAAA LDYEWALEPT IIAGVSVNFR 720 DVNGWTALHW AAFCGRERTV ASLISLGAAP GALTDPSPKY QTGGKTPSDL AYAKGHKGIA 780 GYLAESALSA HLLSLNLDKK EGNAAETSGV KAVHTISERV ATPVKDGDLN DRLSLKDSLA 840 AVCNATQAAA RIHQVFRVQS FQRKQLKEYG DDKFGMSDEQ ALSLIAVKSA KQGHHDEHVN 900 AAAIRIQNKF RSWKGRKDFL IIRQRIVKIQ AHVRGHQVRK NYRKITWSVG IVEKIILRWR 960 RKGSGLRGFK SEALTEGPSK ENSLSKEDDD DFLKEGRKQA EVRLQKALNR VKSMVQYPEA 1020 RDQYRRLLNV VSEFQGTKVQ FDTDPNNSET ADFDDDLIDL EALLDEDTYM PTA

Sequence ? help Back to Top

Protein Sequence Length: 1073 aa Download sequence Send to blast

MAESRRYGLG NQLDIEQILM EAQHRWLRPA EICEILRNYK RFRIAPEPAN MPPSGSLFLF  60
DRKVLRYFRK DGHNWRKKKD GKTVKEAHER LKAGSIDVLH CYYAHGEDNE NFQRRSYWML  120
EEDLSHIVLV HYREVKGNRT SFNRIRENED AETAPNSEID SSFSSSFPPN SYQISQTTDT  180
TSLNSAQASE YEDAESAYNQ ASSTLHSFLE LQRPMAEQIN SGLSDPYYPM MFSNDYQGKS  240
SAIPGIDISS LPQTDINEGS KSVGVTYEPR KNLDFPLRKN ILVNTSAGTQ SLPLQPSLSA  300
IQSENLGIVQ KQEQENFGQL FSEGIGQRLE FGSQPQVQEE WQASGGHSSS LSKWPADQNL  360
HQDAASNLAS ERETNGVELL QSQHPNTQHE YDLKSVQENN VFLEGKPNYI SGIKQSLLDS  420
SFTDEGLKKL DSFNRWMSKE LGDVNESHMQ TSSEAYWDTV EAENADGDSS QVRLDTYMLG  480
PSLSQDQLFT IIDFSPNWAF EDSEVKVLIT GRFLDHQAES SKWSCMFGEV EVPAEVIADG  540
VLRCHTPIHK AGRVPFYVTC SNRLACSEVR EFEYRVNEVR DMDLKYDDSS CTTEELNLRF  600
GKLLCLDSAC PTSGPNNLVE KSQLSSKISL LLREDEDEWD QMLKLTSENN FSVERVEEQL  660
HQKLLKGKLH GWLLQKVAEG GKGASVLDEG GQGVLHFAAA LDYEWALEPT IIAGVSVNFR  720
DVNGWTALHW AAFCGRERTV ASLISLGAAP GALTDPSPKY QTGGKTPSDL AYAKGHKGIA  780
GYLAESALSA HLLSLNLDKK EGNAAETSGV KAVHTISERV ATPVKDGDLN DRLSLKDSLA  840
AVCNATQAAA RIHQVFRVQS FQRKQLKEYG DDKFGMSDEQ ALSLIAVKSA KQGHHDEHVN  900
AAAIRIQNKF RSWKGRKDFL IIRQRIVKIQ AHVRGHQVRK NYRKITWSVG IVEKIILRWR  960
RKGSGLRGFK SEALTEGPSK ENSLSKEDDD DFLKEGRKQA EVRLQKALNR VKSMVQYPEA  1020
RDQYRRLLNV VSEFQGTKVQ FDTDPNNSET ADFDDDLIDL EALLDEDTYM PTA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2cxk_A	2e-14	491	575	9	89	calmodulin binding transcription activator 1
2cxk_B	2e-14	491	575	9	89	calmodulin binding transcription activator 1
2cxk_C	2e-14	491	575	9	89	calmodulin binding transcription activator 1
2cxk_D	2e-14	491	575	9	89	calmodulin binding transcription activator 1
2cxk_E	2e-14	491	575	9	89	calmodulin binding transcription activator 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3'. Binds calmodulin in a calcium-dependent manner in vitro (PubMed:12218065). Regulates transcriptional activity in response to calcium signals (Probable). Involved in freezing tolerance in association with CAMTA1 and CAMTA2 (PubMed:23581962). Required for the cold-induced expression of DREB1B/CBF1, DREB1C/CBF2, ZAT12 and GOLS3 (PubMed:19270186). Involved in response to cold. Contributes together with CAMTA5 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:28351986). Involved together with CAMTA2 and CAMTA4 in the positive regulation of a general stress response (GSR) (PubMed:25039701). Involved in the regulation of GSR amplitude downstream of MEKK1 (PubMed:25157030). Involved in the regulation of a set of genes involved in defense responses against pathogens (PubMed:18298954). Involved in the regulation of both basal resistance and systemic acquired resistance (SAR) (PubMed:21900483). Acts as negative regulator of plant immunity (PubMed:19122675, PubMed:21900483, PubMed:22345509, PubMed:28407487). Binds to the promoter of the defense-related gene EDS1 and represses its expression (PubMed:19122675). Binds to the promoter of the defense-related gene NDR1 and represses its expression (PubMed:22345509). Involved in defense against insects (PubMed:23072934, PubMed:22371088). Required for tolerance to the generalist herbivore Trichoplusia ni, and contributes to the positive regulation of genes associated with glucosinolate metabolism (PubMed:23072934). Required for tolerance to Bradysia impatiens larvae. Mediates herbivore-induced wound response (PubMed:22371088). Required for wound-induced jasmonate accumulation (PubMed:23072934, PubMed:22371088). Involved in the regulation of ethylene-induced senescence by binding to the promoter of the senescence-inducer gene EIN3 and repressing its expression (PubMed:22345509). {ECO:0000269\|PubMed:12218065, ECO:0000269\|PubMed:18298954, ECO:0000269\|PubMed:19122675, ECO:0000269\|PubMed:19270186, ECO:0000269\|PubMed:21900483, ECO:0000269\|PubMed:22345509, ECO:0000269\|PubMed:22371088, ECO:0000269\|PubMed:23072934, ECO:0000269\|PubMed:23581962, ECO:0000269\|PubMed:25039701, ECO:0000269\|PubMed:25157030, ECO:0000269\|PubMed:28351986, ECO:0000269\|PubMed:28407487, ECO:0000305\|PubMed:11925432}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00042	PBM	Transfer from AT2G22300	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015890632.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By heat shock, UVB, salt, wounding, ethylene and methyl jasmonate (PubMed:11162426, PubMed:12218065). Induced by infection with the fungal pathogen Golovinomyces cichoracearum (powdery mildew) and the bacterial pathogen Pseudomonas syringae pv tomato strain DC3000 (PubMed:22345509). {ECO:0000269\|PubMed:11162426, ECO:0000269\|PubMed:12218065, ECO:0000269\|PubMed:22345509}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AM434540	6e-38	AM434540.2 Vitis vinifera contig VV78X210461.8, whole genome shotgun sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015890632.1	0.0	calmodulin-binding transcription activator 3 isoform X1
Refseq	XP_024931875.1	0.0	calmodulin-binding transcription activator 3 isoform X1
Swissprot	Q8GSA7	0.0	CMTA3_ARATH; Calmodulin-binding transcription activator 3
TrEMBL	A0A2P5EKP9	0.0	A0A2P5EKP9_TREOI; Notch
STRING	XP_010087599.1	0.0	(Morus notabilis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22300.2	0.0	signal responsive 1

Publications ? help Back to Top
Zhang L,Du L,Shen C,Yang Y,Poovaiah BW Regulation of plant immunity through ubiquitin-mediated modulation of Ca(2+) -calmodulin-AtSR1/CAMTA3 signaling. Plant J., 2014. 78(2): p. 269-81 [PMID:24528504] Benn G, et al. A key general stress response motif is regulated non-uniformly by CAMTA transcription factors. Plant J., 2014. 80(1): p. 82-92 [PMID:25039701] Rahman H,Yang J,Xu YP,Munyampundu JP,Cai XZ Phylogeny of Plant CAMTAs and Role of AtCAMTAs in Nonhost Resistance to Xanthomonas oryzae pv. oryzae. Front Plant Sci, 2016. 7: p. 177 [PMID:26973658] Benn G, et al. Plastidial metabolite MEcPP induces a transcriptionally centered stress-response hub via the transcription factor CAMTA3. Proc. Natl. Acad. Sci. U.S.A., 2016. 113(31): p. 8855-60 [PMID:27432993] Kidokoro S, et al. Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature. Plant Cell, 2017. 29(4): p. 760-774 [PMID:28351986] Lolle S, et al. Matching NLR Immune Receptors to Autoimmunity in camta3 Mutants Using Antimorphic NLR Alleles. Cell Host Microbe, 2017. 21(4): p. 518-529.e4 [PMID:28407487] Kim YS, et al. CAMTA-Mediated Regulation of Salicylic Acid Immunity Pathway Genes in Arabidopsis Exposed to Low Temperature and Pathogen Infection. Plant Cell, 2017. 29(10): p. 2465-2477 [PMID:28982964] Jacob F, et al. A dominant-interfering camta3 mutation compromises primary transcriptional outputs mediated by both cell surface and intracellular immune receptors in Arabidopsis thaliana. New Phytol., 2018. 217(4): p. 1667-1680 [PMID:29226970]