PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015890633.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family CAMTA
Protein Properties Length: 1069aa    MW: 120343 Da    PI: 5.5852
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015890633.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1179.24.9e-56161322118
            CG-1   2 lkekkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqr 96 
                     ++ ++rwl++ ei++iL n+++++++ e+++ p+sgsl+L++rk++ryfrkDG++w+kkkdgktv+E+he+LK g+++vl+cyYah+e+n++fqr
  XP_015890633.1  16 MEAQHRWLRPAEICEILRNYKRFRIAPEPANMPPSGSLFLFDRKVLRYFRKDGHNWRKKKDGKTVKEAHERLKAGSIDVLHCYYAHGEDNENFQR 110
                     5569******************************************************************************************* PP

            CG-1  97 rcywlLeeelekivlvhylevk 118
                     r+yw+Lee+l++ivlvhy+evk
  XP_015890633.1 111 RSYWMLEEDLSHIVLVHYREVK 132
                     *******************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143782.89111137IPR005559CG-1 DNA-binding domain
SMARTSM010762.7E-7914132IPR005559CG-1 DNA-binding domain
PfamPF038593.5E-4917130IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.101.7E-6485571IPR013783Immunoglobulin-like fold
PfamPF018333.0E-8486570IPR002909IPT domain
SuperFamilySSF812965.91E-19486571IPR014756Immunoglobulin E-set
PROSITE profilePS5029717.29651791IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484032.95E-15670781IPR020683Ankyrin repeat-containing domain
CDDcd002043.32E-11678779No hitNo description
Gene3DG3DSA:1.25.40.201.4E-15680785IPR020683Ankyrin repeat-containing domain
SMARTSM002480.032719748IPR002110Ankyrin repeat
PROSITE profilePS500889.217719751IPR002110Ankyrin repeat
SMARTSM002482200759788IPR002110Ankyrin repeat
SuperFamilySSF525401.12E-7887945IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM0001516894916IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.144896924IPR000048IQ motif, EF-hand binding site
PfamPF006120.066897915IPR000048IQ motif, EF-hand binding site
SMARTSM000150.0039917939IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.487918942IPR000048IQ motif, EF-hand binding site
PfamPF006122.2E-4920939IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0010150Biological Processleaf senescence
GO:0042742Biological Processdefense response to bacterium
GO:0050832Biological Processdefense response to fungus
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005516Molecular Functioncalmodulin binding
Sequence ? help Back to Top
Protein Sequence    Length: 1069 aa     Download sequence    Send to blast
MAESRRYGLD IEQILMEAQH RWLRPAEICE ILRNYKRFRI APEPANMPPS GSLFLFDRKV  60
LRYFRKDGHN WRKKKDGKTV KEAHERLKAG SIDVLHCYYA HGEDNENFQR RSYWMLEEDL  120
SHIVLVHYRE VKGNRTSFNR IRENEDAETA PNSEIDSSFS SSFPPNSYQI SQTTDTTSLN  180
SAQASEYEDA ESAYNQASST LHSFLELQRP MAEQINSGLS DPYYPMMFSN DYQGKSSAIP  240
GIDISSLPQT DINEGSKSVG VTYEPRKNLD FPLRKNILVN TSAGTQSLPL QPSLSAIQSE  300
NLGIVQKQEQ ENFGQLFSEG IGQRLEFGSQ PQVQEEWQAS GGHSSSLSKW PADQNLHQDA  360
ASNLASERET NGVELLQSQH PNTQHEYDLK SVQENNVFLE GKPNYISGIK QSLLDSSFTD  420
EGLKKLDSFN RWMSKELGDV NESHMQTSSE AYWDTVEAEN ADGDSSQVRL DTYMLGPSLS  480
QDQLFTIIDF SPNWAFEDSE VKVLITGRFL DHQAESSKWS CMFGEVEVPA EVIADGVLRC  540
HTPIHKAGRV PFYVTCSNRL ACSEVREFEY RVNEVRDMDL KYDDSSCTTE ELNLRFGKLL  600
CLDSACPTSG PNNLVEKSQL SSKISLLLRE DEDEWDQMLK LTSENNFSVE RVEEQLHQKL  660
LKGKLHGWLL QKVAEGGKGA SVLDEGGQGV LHFAAALDYE WALEPTIIAG VSVNFRDVNG  720
WTALHWAAFC GRERTVASLI SLGAAPGALT DPSPKYQTGG KTPSDLAYAK GHKGIAGYLA  780
ESALSAHLLS LNLDKKEGNA AETSGVKAVH TISERVATPV KDGDLNDRLS LKDSLAAVCN  840
ATQAAARIHQ VFRVQSFQRK QLKEYGDDKF GMSDEQALSL IAVKSAKQGH HDEHVNAAAI  900
RIQNKFRSWK GRKDFLIIRQ RIVKIQAHVR GHQVRKNYRK ITWSVGIVEK IILRWRRKGS  960
GLRGFKSEAL TEGPSKENSL SKEDDDDFLK EGRKQAEVRL QKALNRVKSM VQYPEARDQY  1020
RRLLNVVSEF QGTKVQFDTD PNNSETADFD DDLIDLEALL DEDTYMPTA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cxk_A1e-14487571989calmodulin binding transcription activator 1
2cxk_B1e-14487571989calmodulin binding transcription activator 1
2cxk_C1e-14487571989calmodulin binding transcription activator 1
2cxk_D1e-14487571989calmodulin binding transcription activator 1
2cxk_E1e-14487571989calmodulin binding transcription activator 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3'. Binds calmodulin in a calcium-dependent manner in vitro (PubMed:12218065). Regulates transcriptional activity in response to calcium signals (Probable). Involved in freezing tolerance in association with CAMTA1 and CAMTA2 (PubMed:23581962). Required for the cold-induced expression of DREB1B/CBF1, DREB1C/CBF2, ZAT12 and GOLS3 (PubMed:19270186). Involved in response to cold. Contributes together with CAMTA5 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:28351986). Involved together with CAMTA2 and CAMTA4 in the positive regulation of a general stress response (GSR) (PubMed:25039701). Involved in the regulation of GSR amplitude downstream of MEKK1 (PubMed:25157030). Involved in the regulation of a set of genes involved in defense responses against pathogens (PubMed:18298954). Involved in the regulation of both basal resistance and systemic acquired resistance (SAR) (PubMed:21900483). Acts as negative regulator of plant immunity (PubMed:19122675, PubMed:21900483, PubMed:22345509, PubMed:28407487). Binds to the promoter of the defense-related gene EDS1 and represses its expression (PubMed:19122675). Binds to the promoter of the defense-related gene NDR1 and represses its expression (PubMed:22345509). Involved in defense against insects (PubMed:23072934, PubMed:22371088). Required for tolerance to the generalist herbivore Trichoplusia ni, and contributes to the positive regulation of genes associated with glucosinolate metabolism (PubMed:23072934). Required for tolerance to Bradysia impatiens larvae. Mediates herbivore-induced wound response (PubMed:22371088). Required for wound-induced jasmonate accumulation (PubMed:23072934, PubMed:22371088). Involved in the regulation of ethylene-induced senescence by binding to the promoter of the senescence-inducer gene EIN3 and repressing its expression (PubMed:22345509). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:18298954, ECO:0000269|PubMed:19122675, ECO:0000269|PubMed:19270186, ECO:0000269|PubMed:21900483, ECO:0000269|PubMed:22345509, ECO:0000269|PubMed:22371088, ECO:0000269|PubMed:23072934, ECO:0000269|PubMed:23581962, ECO:0000269|PubMed:25039701, ECO:0000269|PubMed:25157030, ECO:0000269|PubMed:28351986, ECO:0000269|PubMed:28407487, ECO:0000305|PubMed:11925432}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00042PBMTransfer from AT2G22300Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015890633.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat shock, UVB, salt, wounding, ethylene and methyl jasmonate (PubMed:11162426, PubMed:12218065). Induced by infection with the fungal pathogen Golovinomyces cichoracearum (powdery mildew) and the bacterial pathogen Pseudomonas syringae pv tomato strain DC3000 (PubMed:22345509). {ECO:0000269|PubMed:11162426, ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:22345509}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4345406e-38AM434540.2 Vitis vinifera contig VV78X210461.8, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015890633.10.0calmodulin-binding transcription activator 3 isoform X2
SwissprotQ8GSA70.0CMTA3_ARATH; Calmodulin-binding transcription activator 3
TrEMBLA0A2P5EKP90.0A0A2P5EKP9_TREOI; Notch
STRINGXP_010087599.10.0(Morus notabilis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22300.20.0signal responsive 1
Publications ? help Back to Top
  1. Zhang L,Du L,Shen C,Yang Y,Poovaiah BW
    Regulation of plant immunity through ubiquitin-mediated modulation of Ca(2+) -calmodulin-AtSR1/CAMTA3 signaling.
    Plant J., 2014. 78(2): p. 269-81
    [PMID:24528504]
  2. Benn G, et al.
    A key general stress response motif is regulated non-uniformly by CAMTA transcription factors.
    Plant J., 2014. 80(1): p. 82-92
    [PMID:25039701]
  3. Rahman H,Yang J,Xu YP,Munyampundu JP,Cai XZ
    Phylogeny of Plant CAMTAs and Role of AtCAMTAs in Nonhost Resistance to Xanthomonas oryzae pv. oryzae.
    Front Plant Sci, 2016. 7: p. 177
    [PMID:26973658]
  4. Benn G, et al.
    Plastidial metabolite MEcPP induces a transcriptionally centered stress-response hub via the transcription factor CAMTA3.
    Proc. Natl. Acad. Sci. U.S.A., 2016. 113(31): p. 8855-60
    [PMID:27432993]
  5. Kidokoro S, et al.
    Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature.
    Plant Cell, 2017. 29(4): p. 760-774
    [PMID:28351986]
  6. Lolle S, et al.
    Matching NLR Immune Receptors to Autoimmunity in camta3 Mutants Using Antimorphic NLR Alleles.
    Cell Host Microbe, 2017. 21(4): p. 518-529.e4
    [PMID:28407487]
  7. Kim YS, et al.
    CAMTA-Mediated Regulation of Salicylic Acid Immunity Pathway Genes in Arabidopsis Exposed to Low Temperature and Pathogen Infection.
    Plant Cell, 2017. 29(10): p. 2465-2477
    [PMID:28982964]
  8. Jacob F, et al.
    A dominant-interfering camta3 mutation compromises primary transcriptional outputs mediated by both cell surface and intracellular immune receptors in Arabidopsis thaliana.
    New Phytol., 2018. 217(4): p. 1667-1680
    [PMID:29226970]