PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015890634.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family CAMTA
Protein Properties Length: 1054aa    MW: 118567 Da    PI: 5.6447
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015890634.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-11781.2e-5531174118
            CG-1   4 ekkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrc 98 
                      ++rwl++ ei++iL n+++++++ e+++ p+sgsl+L++rk++ryfrkDG++w+kkkdgktv+E+he+LK g+++vl+cyYah+e+n++fqrr+
  XP_015890634.1   3 AQHRWLRPAEICEILRNYKRFRIAPEPANMPPSGSLFLFDRKVLRYFRKDGHNWRKKKDGKTVKEAHERLKAGSIDVLHCYYAHGEDNENFQRRS 97 
                     59********************************************************************************************* PP

            CG-1  99 ywlLeeelekivlvhylevk 118
                     yw+Lee+l++ivlvhy+evk
  XP_015890634.1  98 YWMLEEDLSHIVLVHYREVK 117
                     *****************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010767.3E-781117IPR005559CG-1 DNA-binding domain
PROSITE profilePS5143781.2671122IPR005559CG-1 DNA-binding domain
PfamPF038593.4E-492115IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.101.7E-6470556IPR013783Immunoglobulin-like fold
PfamPF018332.9E-8471555IPR002909IPT domain
SuperFamilySSF812965.91E-19471556IPR014756Immunoglobulin E-set
PROSITE profilePS5029717.29636776IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484032.95E-15655766IPR020683Ankyrin repeat-containing domain
CDDcd002043.26E-11663764No hitNo description
Gene3DG3DSA:1.25.40.201.4E-15665770IPR020683Ankyrin repeat-containing domain
PROSITE profilePS500889.217704736IPR002110Ankyrin repeat
SMARTSM002480.032704733IPR002110Ankyrin repeat
SMARTSM002482200744773IPR002110Ankyrin repeat
SuperFamilySSF525401.12E-7872930IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM0001516879901IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.144881909IPR000048IQ motif, EF-hand binding site
PfamPF006120.065882900IPR000048IQ motif, EF-hand binding site
SMARTSM000150.0039902924IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.487903927IPR000048IQ motif, EF-hand binding site
PfamPF006122.1E-4905924IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0010150Biological Processleaf senescence
GO:0042742Biological Processdefense response to bacterium
GO:0050832Biological Processdefense response to fungus
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005516Molecular Functioncalmodulin binding
Sequence ? help Back to Top
Protein Sequence    Length: 1054 aa     Download sequence    Send to blast
MEAQHRWLRP AEICEILRNY KRFRIAPEPA NMPPSGSLFL FDRKVLRYFR KDGHNWRKKK  60
DGKTVKEAHE RLKAGSIDVL HCYYAHGEDN ENFQRRSYWM LEEDLSHIVL VHYREVKGNR  120
TSFNRIRENE DAETAPNSEI DSSFSSSFPP NSYQISQTTD TTSLNSAQAS EYEDAESAYN  180
QASSTLHSFL ELQRPMAEQI NSGLSDPYYP MMFSNDYQGK SSAIPGIDIS SLPQTDINEG  240
SKSVGVTYEP RKNLDFPLRK NILVNTSAGT QSLPLQPSLS AIQSENLGIV QKQEQENFGQ  300
LFSEGIGQRL EFGSQPQVQE EWQASGGHSS SLSKWPADQN LHQDAASNLA SERETNGVEL  360
LQSQHPNTQH EYDLKSVQEN NVFLEGKPNY ISGIKQSLLD SSFTDEGLKK LDSFNRWMSK  420
ELGDVNESHM QTSSEAYWDT VEAENADGDS SQVRLDTYML GPSLSQDQLF TIIDFSPNWA  480
FEDSEVKVLI TGRFLDHQAE SSKWSCMFGE VEVPAEVIAD GVLRCHTPIH KAGRVPFYVT  540
CSNRLACSEV REFEYRVNEV RDMDLKYDDS SCTTEELNLR FGKLLCLDSA CPTSGPNNLV  600
EKSQLSSKIS LLLREDEDEW DQMLKLTSEN NFSVERVEEQ LHQKLLKGKL HGWLLQKVAE  660
GGKGASVLDE GGQGVLHFAA ALDYEWALEP TIIAGVSVNF RDVNGWTALH WAAFCGRERT  720
VASLISLGAA PGALTDPSPK YQTGGKTPSD LAYAKGHKGI AGYLAESALS AHLLSLNLDK  780
KEGNAAETSG VKAVHTISER VATPVKDGDL NDRLSLKDSL AAVCNATQAA ARIHQVFRVQ  840
SFQRKQLKEY GDDKFGMSDE QALSLIAVKS AKQGHHDEHV NAAAIRIQNK FRSWKGRKDF  900
LIIRQRIVKI QAHVRGHQVR KNYRKITWSV GIVEKIILRW RRKGSGLRGF KSEALTEGPS  960
KENSLSKEDD DDFLKEGRKQ AEVRLQKALN RVKSMVQYPE ARDQYRRLLN VVSEFQGTKV  1020
QFDTDPNNSE TADFDDDLID LEALLDEDTY MPTA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cxk_A2e-14472556989calmodulin binding transcription activator 1
2cxk_B2e-14472556989calmodulin binding transcription activator 1
2cxk_C2e-14472556989calmodulin binding transcription activator 1
2cxk_D2e-14472556989calmodulin binding transcription activator 1
2cxk_E2e-14472556989calmodulin binding transcription activator 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3'. Binds calmodulin in a calcium-dependent manner in vitro (PubMed:12218065). Regulates transcriptional activity in response to calcium signals (Probable). Involved in freezing tolerance in association with CAMTA1 and CAMTA2 (PubMed:23581962). Required for the cold-induced expression of DREB1B/CBF1, DREB1C/CBF2, ZAT12 and GOLS3 (PubMed:19270186). Involved in response to cold. Contributes together with CAMTA5 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:28351986). Involved together with CAMTA2 and CAMTA4 in the positive regulation of a general stress response (GSR) (PubMed:25039701). Involved in the regulation of GSR amplitude downstream of MEKK1 (PubMed:25157030). Involved in the regulation of a set of genes involved in defense responses against pathogens (PubMed:18298954). Involved in the regulation of both basal resistance and systemic acquired resistance (SAR) (PubMed:21900483). Acts as negative regulator of plant immunity (PubMed:19122675, PubMed:21900483, PubMed:22345509, PubMed:28407487). Binds to the promoter of the defense-related gene EDS1 and represses its expression (PubMed:19122675). Binds to the promoter of the defense-related gene NDR1 and represses its expression (PubMed:22345509). Involved in defense against insects (PubMed:23072934, PubMed:22371088). Required for tolerance to the generalist herbivore Trichoplusia ni, and contributes to the positive regulation of genes associated with glucosinolate metabolism (PubMed:23072934). Required for tolerance to Bradysia impatiens larvae. Mediates herbivore-induced wound response (PubMed:22371088). Required for wound-induced jasmonate accumulation (PubMed:23072934, PubMed:22371088). Involved in the regulation of ethylene-induced senescence by binding to the promoter of the senescence-inducer gene EIN3 and repressing its expression (PubMed:22345509). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:18298954, ECO:0000269|PubMed:19122675, ECO:0000269|PubMed:19270186, ECO:0000269|PubMed:21900483, ECO:0000269|PubMed:22345509, ECO:0000269|PubMed:22371088, ECO:0000269|PubMed:23072934, ECO:0000269|PubMed:23581962, ECO:0000269|PubMed:25039701, ECO:0000269|PubMed:25157030, ECO:0000269|PubMed:28351986, ECO:0000269|PubMed:28407487, ECO:0000305|PubMed:11925432}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00042PBMTransfer from AT2G22300Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015890634.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat shock, UVB, salt, wounding, ethylene and methyl jasmonate (PubMed:11162426, PubMed:12218065). Induced by infection with the fungal pathogen Golovinomyces cichoracearum (powdery mildew) and the bacterial pathogen Pseudomonas syringae pv tomato strain DC3000 (PubMed:22345509). {ECO:0000269|PubMed:11162426, ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:22345509}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4345406e-38AM434540.2 Vitis vinifera contig VV78X210461.8, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015890632.10.0calmodulin-binding transcription activator 3 isoform X1
RefseqXP_015890633.10.0calmodulin-binding transcription activator 3 isoform X2
RefseqXP_015890634.10.0calmodulin-binding transcription activator 3 isoform X3
RefseqXP_024931875.10.0calmodulin-binding transcription activator 3 isoform X1
SwissprotQ8GSA70.0CMTA3_ARATH; Calmodulin-binding transcription activator 3
TrEMBLA0A2P5EKP90.0A0A2P5EKP9_TREOI; Notch
STRINGXP_010087599.10.0(Morus notabilis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22300.20.0signal responsive 1
Publications ? help Back to Top
  1. Zhang L,Du L,Shen C,Yang Y,Poovaiah BW
    Regulation of plant immunity through ubiquitin-mediated modulation of Ca(2+) -calmodulin-AtSR1/CAMTA3 signaling.
    Plant J., 2014. 78(2): p. 269-81
    [PMID:24528504]
  2. Benn G, et al.
    A key general stress response motif is regulated non-uniformly by CAMTA transcription factors.
    Plant J., 2014. 80(1): p. 82-92
    [PMID:25039701]
  3. Rahman H,Yang J,Xu YP,Munyampundu JP,Cai XZ
    Phylogeny of Plant CAMTAs and Role of AtCAMTAs in Nonhost Resistance to Xanthomonas oryzae pv. oryzae.
    Front Plant Sci, 2016. 7: p. 177
    [PMID:26973658]
  4. Benn G, et al.
    Plastidial metabolite MEcPP induces a transcriptionally centered stress-response hub via the transcription factor CAMTA3.
    Proc. Natl. Acad. Sci. U.S.A., 2016. 113(31): p. 8855-60
    [PMID:27432993]
  5. Kidokoro S, et al.
    Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature.
    Plant Cell, 2017. 29(4): p. 760-774
    [PMID:28351986]
  6. Lolle S, et al.
    Matching NLR Immune Receptors to Autoimmunity in camta3 Mutants Using Antimorphic NLR Alleles.
    Cell Host Microbe, 2017. 21(4): p. 518-529.e4
    [PMID:28407487]
  7. Kim YS, et al.
    CAMTA-Mediated Regulation of Salicylic Acid Immunity Pathway Genes in Arabidopsis Exposed to Low Temperature and Pathogen Infection.
    Plant Cell, 2017. 29(10): p. 2465-2477
    [PMID:28982964]
  8. Jacob F, et al.
    A dominant-interfering camta3 mutation compromises primary transcriptional outputs mediated by both cell surface and intracellular immune receptors in Arabidopsis thaliana.
    New Phytol., 2018. 217(4): p. 1667-1680
    [PMID:29226970]