PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015890660.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

NF-YC

Protein Properties

Length: 202aa MW: 22599.7 Da PI: 10.3012

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015890660.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	46	1.2e-14	93	184	8	99
NF-YC 8 kqiekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprd 99 +++ +++d k +++P+ rik+i+++++ +is+ea l+ ka e f+ ++ s++ + + ++++l ++++v + ++dfl d vp++ XP_015890660.1 93 EEVAEKEDAKMNKFPMDRIKRIIRSEDSNLRISSEAIFLVNKATEKFLEKFCADSYVCCVQDRKKSLGYKHLSSIVCKRRKYDFLSDFVPEK 184 5678899**********************************************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	2.64E-16	100	183	IPR009072	Histone-fold
Pfam	PF00808	1.3E-14	105	166	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
Gene3D	G3DSA:1.10.20.10	3.8E-21	106	183	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 202 aa Download sequence Send to blast
MASSKKPVQE KKGNETKKKV TEGNSGKKGR NETNSSKTCN GTVSNSKIVP LQSSSSESQH 60 KVEDGPEITK TPTSSSKSRK GKGQQKVKRE REEEVAEKED AKMNKFPMDR IKRIIRSEDS 120 NLRISSEAIF LVNKATEKFL EKFCADSYVC CVQDRKKSLG YKHLSSIVCK RRKYDFLSDF 180 VPEKLKAEDA LAVAKLTKSE AG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	4	18	KKPVQEKKGNETKKK
2	154	172	RKKSLGYKHLSSIVCKRRK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015890660.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015890660.1	1e-145	DNA polymerase epsilon subunit 4
TrEMBL	A0A2P5DEY0	5e-71	A0A2P5DEY0_PARAD; Transcription initiation factor
STRING	XP_008358413.1	9e-60	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF12016	30	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07980.1	2e-32	nuclear factor Y, subunit C10