PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015890959.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

Dof

Protein Properties

Length: 252aa MW: 26845.3 Da PI: 8.4463

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015890959.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	39.9	8.7e-13	5	29	38	62
zf-Dof 38 ryWtkGGalrnvPvGggrrknkkss 62 ryWt+GG+lrnvPvGgg+rk k+++ XP_015890959.1 5 RYWTQGGTLRNVPVGGGCRKGKRAK 29 9*******************99875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	3.0E-6	5	27	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	4.3E-8	5	27	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 252 aa Download sequence Send to blast
MPSLRYWTQG GTLRNVPVGG GCRKGKRAKT STSGQNSRSQ AQPEPPLPPQ QPSQQVQQNM 60 ANPPAIISSG SVMTTTPAMR TIEPGALPSQ YYPGSGYLSS LAAIHSLNQS QPFDQALDVG 120 TDQLAGNNSS NMSLLQGFSV SSFGSQQQQQ HQIQPSQTHF YQTAGNRDKS INESLYQSEE 180 NLIQTAAGRS TSSSSPHEWP HNFMNTSGAT TASSESALWT MGNTKATANT TSAGSSFNPN 240 QWPDLPGYGP PP

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015890959.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015890959.1	0.0	dof zinc finger protein DOF4.4-like isoform X2
TrEMBL	A0A1U8KBV6	3e-55	A0A1U8KBV6_GOSHI; dof zinc finger protein DOF1.2-like
STRING	Gorai.009G168400.1	1e-53	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G52440.1	3e-10	Dof family protein