PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015890973.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family NF-YB
Protein Properties Length: 242aa    MW: 26440.2 Da    PI: 7.4042
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015890973.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB180.51.4e-5625120297
           NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelege 96 
                     +e+drflPianvsrimkk lPanakisk+aketvqecvsefisf+t+easdkcqrekrktingddllwa++tlGfe+yv plkvyl+kyre+ege
  XP_015890973.1  25 KEHDRFLPIANVSRIMKKSLPANAKISKEAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVSPLKVYLNKYREIEGE 119
                     799*******************************************************************************************9 PP

           NF-YB  97 k 97 
                     k
  XP_015890973.1 120 K 120
                     7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.103.0E-5421144IPR009072Histone-fold
SuperFamilySSF471136.29E-4228151IPR009072Histone-fold
PfamPF008082.3E-273094IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006152.5E-205876No hitNo description
PROSITE patternPS0068506177IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006152.5E-207795No hitNo description
PRINTSPR006152.5E-2096114No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MTGKRNQTSP VGSPLSGNIS DSSSKEHDRF LPIANVSRIM KKSLPANAKI SKEAKETVQE  60
CVSEFISFIT GEASDKCQRE KRKTINGDDL LWAMTTLGFE NYVSPLKVYL NKYREIEGEK  120
NSMARQEDHH PHSSPTNSHA TNENIVHHHH QNSKLGANSL SNRVDFQGLN GGFYSLGSQM  180
TQKGGYEESG SRLVSYGDDF MNTASAAAAG AYNTMNGVYE NGDAAGNANR AMAAQLHHGI  240
GW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B5e-4825115292Transcription factor HapC (Eurofung)
4g92_B5e-4825115292Transcription factor HapC (Eurofung)
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015890973.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015890973.10.0nuclear transcription factor Y subunit B-8-like
TrEMBLA0A2P5ALR71e-103A0A2P5ALR7_PARAD; Nuclear transcription factor Y subunit B
STRINGcassava4.1_026597m1e-109(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF59134150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14540.18e-66nuclear factor Y, subunit B3