PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015891025.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family Trihelix
Protein Properties Length: 520aa    MW: 58963.5 Da    PI: 5.8988
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015891025.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix98.55.6e-3159143187
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                     rW++qe+laL+++r++m+ ++r+++lk+plWe+vs+kmre g++rs+k+Ckek+en+ k++k++k+g+++r   + + +++f+qlea
  XP_015891025.1  59 RWPQQETLALLKIRSDMDVTFRDANLKAPLWEDVSRKMRELGYNRSAKKCKEKFENIYKYHKRTKDGRSGRP--NGKAYRFFEQLEA 143
                     8********************************************************************984..4456*******85 PP
2trihelix105.73.3e-33346431187
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                     rW+k+ev+aLi++r++++ +++++  k+plWee+s +m++ g++rs+k+Ckekwen+nk++k++ke++kkr +e+s+tcpyf+ql+a
  XP_015891025.1 346 RWPKDEVQALIRLRTNLDLQYEENGPKGPLWEEISTAMKKLGYNRSAKRCKEKWENINKYFKRVKESNKKR-PEDSKTCPYFHQLDA 431
                     8*********************************************************************8.99***********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.003956118IPR001005SANT/Myb domain
PfamPF138375.5E-2158144No hitNo description
CDDcd122035.43E-2558123No hitNo description
PROSITE profilePS500906.9858116IPR017877Myb-like domain
PROSITE profilePS500907.817339403IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.603.1E-5342402IPR009057Homeodomain-like
SMARTSM007179.2E-4343405IPR001005SANT/Myb domain
SuperFamilySSF466897.27E-5344418IPR009057Homeodomain-like
CDDcd122032.42E-26345410No hitNo description
PfamPF138371.1E-23345432No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 520 aa     Download sequence    Send to blast
MLEEVSTVPE NLSAGTGNGE QQVSGDGDGG GVVGSVSVGF GEEERVGAEE GERNWLGNRW  60
PQQETLALLK IRSDMDVTFR DANLKAPLWE DVSRKMRELG YNRSAKKCKE KFENIYKYHK  120
RTKDGRSGRP NGKAYRFFEQ LEALENHPFD PHPPSPSRGQ VKTSTVETIT SPTDVIHDAI  180
PCSIHHPNMN LVDNSTSSSS SSGNESEDKK KKKRKMADFF GRLMKEVIDK QEDLQRQFIE  240
TLERCERDRM AREEAWKIQE LERIRREREL LVQERSIAAA KDAAVLAFLK KFSEQADPVQ  300
LAENSMIAER VTDKQGMSNG ESPGQMCLDK QEKHNGGSFM QLSSSRWPKD EVQALIRLRT  360
NLDLQYEENG PKGPLWEEIS TAMKKLGYNR SAKRCKEKWE NINKYFKRVK ESNKKRPEDS  420
KTCPYFHQLD ALYNKKTKKV DNSGNSGCDV RPEELLMHMM EGQQRLDSTM EDGESENFGQ  480
RHEEDNENED GSGDGNQILA GDHSQMTAGN SSQSAADNPS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1208214KKKKKRK
2208215KKKKKRKM
3209214KKKKRK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specific DNA sequence. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015891025.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015891025.10.0trihelix transcription factor GT-2-like
SwissprotQ391171e-125TGT2_ARATH; Trihelix transcription factor GT-2
TrEMBLA0A2P5ED760.0A0A2P5ED76_TREOI; TFIIB transcription factor
STRINGcassava4.1_006275m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF37334181
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76890.22e-58Trihelix family protein