PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015891165.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family GATA
Protein Properties Length: 205aa    MW: 23588.8 Da    PI: 8.6311
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015891165.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA59.34.9e-19140174135
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     Cs+C++ kTp+WR gp g+k+LCnaCG++y++ +l
  XP_015891165.1 140 CSHCQAEKTPQWRAGPMGPKSLCNACGVRYKSGRL 174
                     *******************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004012.6E-15134184IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.61E-13137196No hitNo description
PROSITE profilePS5011410.989138170IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.104.2E-14138172IPR013088Zinc finger, NHR/GATA-type
PfamPF003206.8E-17140174IPR000679Zinc finger, GATA-type
PROSITE patternPS003440140165IPR000679Zinc finger, GATA-type
CDDcd002021.08E-13140190No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MAVEDKYNVN KNYNHEDHLD LEQYFNLFDP LFKEIDFSTD KVFDDLPISL ADEPIISWNN  60
IDLEVPQKEH ESCFSSSADY GDQLSMINSP KGHEKVKPPK DVDQNNICSF AIKKKRSKTG  120
SKKRTSCFAL KNDCMKRRCC SHCQAEKTPQ WRAGPMGPKS LCNACGVRYK SGRLVPEYRP  180
AASPSFDSFK HSNFHKRILK RKMDT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1195202KRILKRKM
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015891165.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015891165.11e-153GATA transcription factor 4-like
TrEMBLA0A1R3GGP98e-35A0A1R3GGP9_COCAP; Zinc finger, GATA-type
STRINGPOPTR_0005s06720.12e-34(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1634779
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32890.15e-31GATA transcription factor 9