PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015891196.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family bHLH
Protein Properties Length: 306aa    MW: 34222.3 Da    PI: 5.8624
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015891196.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.21.5e-08116156954
                     HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      r RR+ri +++  L++l+P       +K++ a++L +A++Y+k L
  XP_015891196.1 116 ARHRRERISEKIRILQRLVPGG-----TKMDTASMLDEAIRYVKFL 156
                     699*****************87.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.951107156IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.89E-14113168IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-12113162IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.69E-10113161No hitNo description
Gene3DG3DSA:4.10.280.104.0E-12113165IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.2E-6117156IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010500Biological Processtransmitting tissue development
GO:0048462Biological Processcarpel formation
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MDTNSSWNNL HHMTMEENTN HQHQIPSNSF WPNYPFEPHQ IPTPSSNFTS SGDHHQIGNH  60
QLEEEDEQEE EEELGAMKEM MYKIAAMQPV DIDPATIRKP KRRNVRISDD PQSVAARHRR  120
ERISEKIRIL QRLVPGGTKM DTASMLDEAI RYVKFLKRQI RLLQSNQCVG NWAFAPSKPH  180
GSSSDAAMTN TTAGAAGFGF GGGNRGDGGL SYNNHELKEL TGIVDAHVKG RNWHEVFEKV  240
EMIDVLASLV NALERKQNPW GHIGPSSSTM GEQDGAMEEA IANLVATVNN LMEDFQAAVV  300
ALKMEI
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015891196.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024932592.11e-163transcription factor HEC3
TrEMBLA0A061DIQ03e-72A0A061DIQ0_THECC; Basic helix-loop-helix DNA-binding superfamily protein
STRINGEOX924895e-73(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65134141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00120.13e-49bHLH family protein