PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015891257.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family NAC
Protein Properties Length: 192aa    MW: 22610.1 Da    PI: 9.012
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015891257.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM163.11.1e-50101381129
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                     lppGfrF P+deelv++yL kk++++++    ++ e+d++++ePw+Lp+ +k + +ewyfFs rd+kyatg r+nrat++gyWkatgkd++vl+ 
  XP_015891257.1  10 LPPGFRFYPSDEELVCHYLYKKITNEEVLK-GTLVEIDLHTCEPWQLPEVAKLNASEWYFFSFRDRKYATGYRTNRATTTGYWKATGKDRTVLDP 103
                     79************************9655.78***************87788899**************************************9 PP

             NAM  96 .kgelvglkktLvfykgrapkgektdWvmheyrle 129
                      ++e +g++ktLvfy++rap+g kt W+mhe+rle
  XP_015891257.1 104 vTREIIGMRKTLVFYRNRAPNGIKTGWIMHEFRLE 138
                     88899***************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019419.68E-618156IPR003441NAC domain
PROSITE profilePS5100557.4610156IPR003441NAC domain
PfamPF023655.7E-2811137IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MGLRDIGATL PPGFRFYPSD EELVCHYLYK KITNEEVLKG TLVEIDLHTC EPWQLPEVAK  60
LNASEWYFFS FRDRKYATGY RTNRATTTGY WKATGKDRTV LDPVTREIIG MRKTLVFYRN  120
RAPNGIKTGW IMHEFRLETP HMPPKEDWVL CRVFHKSKAD DTNKLMEVEL LVFYLYEGFV  180
LAEKVKRREG SM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A6e-47915916168NO APICAL MERISTEM PROTEIN
1ut4_B6e-47915916168NO APICAL MERISTEM PROTEIN
1ut7_A6e-47915916168NO APICAL MERISTEM PROTEIN
1ut7_B6e-47915916168NO APICAL MERISTEM PROTEIN
3swm_A6e-47915919171NAC domain-containing protein 19
3swm_B6e-47915919171NAC domain-containing protein 19
3swm_C6e-47915919171NAC domain-containing protein 19
3swm_D6e-47915919171NAC domain-containing protein 19
3swp_A6e-47915919171NAC domain-containing protein 19
3swp_B6e-47915919171NAC domain-containing protein 19
3swp_C6e-47915919171NAC domain-containing protein 19
3swp_D6e-47915919171NAC domain-containing protein 19
4dul_A6e-47915916168NAC domain-containing protein 19
4dul_B6e-47915916168NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015891257.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015891257.11e-142NAC domain-containing protein 21/22-like
SwissprotQ84TE65e-63NAC22_ARATH; NAC domain-containing protein 21/22
TrEMBLR4NHJ51e-116R4NHJ5_JATCU; NAC transcription factor 009
STRINGcassava4.1_030482m1e-117(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF43813359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28530.11e-94NAC domain containing protein 74
Publications ? help Back to Top
  1. Le Hénanff G, et al.
    Grapevine NAC1 transcription factor as a convergent node in developmental processes, abiotic stresses, and necrotrophic/biotrophic pathogen tolerance.
    J. Exp. Bot., 2013. 64(16): p. 4877-93
    [PMID:24043850]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Xiao D, et al.
    SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1275-91
    [PMID:26304848]
  4. Huo X,Wang C,Teng Y,Liu X
    Identification of miRNAs associated with dark-induced senescence in Arabidopsis.
    BMC Plant Biol., 2015. 15: p. 266
    [PMID:26530097]
  5. Chen X, et al.
    Auxin-Independent NAC Pathway Acts in Response to Explant-Specific Wounding and Promotes Root Tip Emergence during de Novo Root Organogenesis in Arabidopsis.
    Plant Physiol., 2016. 170(4): p. 2136-45
    [PMID:26850273]
  6. Liu C,Wang B,Li Z,Peng Z,Zhang J
    TsNAC1 Is a Key Transcription Factor in Abiotic Stress Resistance and Growth.
    Plant Physiol., 2018. 176(1): p. 742-756
    [PMID:29122985]