PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015891367.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family LBD
Protein Properties Length: 239aa    MW: 26349.2 Da    PI: 6.586
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015891367.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260122.13e-3891091100
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                     +C aCk+lrrkC+k+Cv+apyf++eq +++fa++hk+FGasnv+kll++lp ++r  a+ ++ yeA+ar++dP+yG+v++i++lqqq+ +l+a+l
  XP_015891367.1   9 PCGACKFLRRKCVKGCVFAPYFCHEQgASNFAAIHKVFGASNVSKLLAHLPVSDRCGAAITISYEAQARLKDPIYGCVSHIFALQQQVISLQAQL 103
                     7*************************89******************************************************************* PP

          DUF260  95 allkee 100
                     a++ke+
  XP_015891367.1 104 ASIKEQ 109
                     *99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089121.958110IPR004883Lateral organ boundaries, LOB
PfamPF031951.5E-369107IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010311Biological Processlateral root formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MTGSGSGSPC GACKFLRRKC VKGCVFAPYF CHEQGASNFA AIHKVFGASN VSKLLAHLPV  60
SDRCGAAITI SYEAQARLKD PIYGCVSHIF ALQQQVISLQ AQLASIKEQS ANNGSFINGP  120
DNANWNQKFN GRLSHQEHAQ NWFQQENSNL VPQFSPNLTN DASMMPYLES NKLMDPNNLV  180
GSCESSVVPD ENVSYGRFDE ASDHFWSSLD AQTINRQWGG FHDSNDLHSG PFNYTQQYS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A7e-3621034104LOB family transfactor Ramosa2.1
5ly0_B7e-3621034104LOB family transfactor Ramosa2.1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in lateral root formation. Regulated by the transcriptional activators ARF7 and ARF19. {ECO:0000269|PubMed:17259263}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015891367.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. {ECO:0000269|PubMed:15659631, ECO:0000269|PubMed:17259263}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015891367.11e-180LOB domain-containing protein 29-like
SwissprotQ9M2J75e-66LBD29_ARATH; LOB domain-containing protein 29
TrEMBLW9SJN51e-101W9SJN5_9ROSA; Uncharacterized protein
STRINGXP_010111895.11e-102(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35713366
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58190.12e-68lateral organ boundaries-domain 29
Publications ? help Back to Top
  1. Gupta A,Singh M,Laxmi A
    Interaction between glucose and brassinosteroid during the regulation of lateral root development in Arabidopsis.
    Plant Physiol., 2015. 168(1): p. 307-20
    [PMID:25810094]
  2. Porco S, et al.
    Lateral root emergence in Arabidopsis is dependent on transcription factor LBD29 regulation of auxin influx carrier LAX3.
    Development, 2016. 143(18): p. 3340-9
    [PMID:27578783]
  3. Lee K,Seo PJ
    High-temperature promotion of callus formation requires the BIN2-ARF-LBD axis in Arabidopsis.
    Planta, 2017. 246(4): p. 797-802
    [PMID:28766014]
  4. Xu C,Cao H,Xu E,Zhang S,Hu Y
    Genome-Wide Identification of Arabidopsis LBD29 Target Genes Reveals the Molecular Events behind Auxin-Induced Cell Reprogramming during Callus Formation.
    Plant Cell Physiol., 2018. 59(4): p. 744-755
    [PMID:29121271]
  5. Xu C, et al.
    Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration.
    Nat Plants, 2018. 4(2): p. 108-115
    [PMID:29358751]