PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015891368.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

LBD

Protein Properties

Length: 249aa MW: 28007.6 Da PI: 6.3789

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015891368.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	116.3	1.8e-36	7	94	1	87
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqql 87 +C aCk+lrrkC+k+C++apyf+++q ++fa++hk+FGasnv+kll++lp ++r +a+ ++ yeA+ar++dP+yG+v++i++lqqql XP_015891368.1 7 PCGACKFLRRKCVKGCIFAPYFCHDQgVNHFAAIHKVFGASNVSKLLAHLPVSDRCEAAVTISYEAQARLQDPIYGCVSHIFALQQQL 94 7***********************77********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	20.713	6	108	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.5E-34	7	94	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 249 aa Download sequence Send to blast
MTGSGSPCGA CKFLRRKCVK GCIFAPYFCH DQGVNHFAAI HKVFGASNVS KLLAHLPVSD 60 RCEAAVTISY EAQARLQDPI YGCVSHIFAL QQQLFYIYIY IYIYIYIYIY QVVSLQAQLA 120 SMKEQAAQSF SSGSAFANPN GKVLYGKLPF SQAPQDWFEP ENKETVPQFN PNLAANSATM 180 TYHGNGVINP NSMEINYENS VKIPDENASY RSFEEVSCFD MQMNNRQYCS FQEADELQSM 240 AFGYINQHS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	3e-32	3	97	7	100	LOB family transfactor Ramosa2.1
5ly0_B	3e-32	3	97	7	100	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015891368.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024932744.1	1e-169	LOB domain-containing protein 29-like
TrEMBL	A0A061DQW5	1e-105	A0A061DQW5_THECC; Lateral organ boundaries domain family protein
STRING	EOX94501	1e-106	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3571	33	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G58190.1	5e-60	lateral organ boundaries-domain 29