PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015891386.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family HSF
Protein Properties Length: 363aa    MW: 41604.8 Da    PI: 5.2561
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015891386.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind111.94.6e-35441352102
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Fl+k+y++++d+++++++sws+ g+sfvv+d+++fa ++Lp++Fkh+nf+SFvRQLn+YgF+k++ ++         weF+++ F  g+++ll++
  XP_015891386.1  44 FLTKTYDMVDDPTTNHIVSWSRGGSSFVVWDPHSFAMNLLPRFFKHNNFSSFVRQLNTYGFRKIDPDR---------WEFANEGFLSGQRHLLRN 129
                     9****************************************************************999.........****************** PP

                     XXXXXX CS
    HSF_DNA-bind  97 ikrkks 102
                     ikr++ 
  XP_015891386.1 130 IKRRRA 135
                     ***986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.3E-3840133IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467852.58E-3540133IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.1E-6140133IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.6E-204467IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.6E-3144133IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.6E-208294IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434083107IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.6E-2095107IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MNPLYSVKEE YPGGSSYSQQ GGELPVMHPP QPMDGLHDVG PPPFLTKTYD MVDDPTTNHI  60
VSWSRGGSSF VVWDPHSFAM NLLPRFFKHN NFSSFVRQLN TYGFRKIDPD RWEFANEGFL  120
SGQRHLLRNI KRRRATPQPL FPQQALGPCV EVGRFGIGGE VDRLRRDKQV LMMELVKLRQ  180
QQQSTRACLQ AMEQRLQGTE MKQQQMMAFL ARAMQNPAFL QQLVQQKEKR KELEEAMSKK  240
RRRPIDQGRS SVGLSESSRR GEGINTVKTE PLEFGDYGFE VSELEALALE MQGFGKTRKE  300
QDEGQEELEA PESGDKELDE GFWEELFSER FEEELGMRGG ERGEDEDVNV LADRFGYLGS  360
SPR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B8e-25141334129Heat shock factor protein 1
5d5v_B8e-25141334129Heat shock factor protein 1
5d5v_D8e-25141334129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1228242KRKELEEAMSKKRRR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015891386.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015891434.10.0heat stress transcription factor A-7a-like
RefseqXP_015891435.10.0heat stress transcription factor A-7a-like
RefseqXP_024932846.10.0heat stress transcription factor A-7a-like
RefseqXP_024933008.10.0heat stress transcription factor A-7a-like isoform X2
SwissprotQ9LUH81e-127HFA6B_ARATH; Heat stress transcription factor A-6b
TrEMBLA0A251N5G90.0A0A251N5G9_PRUPE; Uncharacterized protein
STRINGEOX946440.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF110034105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.11e-123heat shock transcription factor A6B