PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015891480.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

bHLH

Protein Properties

Length: 746aa MW: 82628.6 Da PI: 6.4323

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015891480.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	11.5	0.00056	579	616	13	55
HHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 13 RdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 R+ i +++ eLrel+P+ a K s + Le++++++ +q XP_015891480.1 579 RQLIQDRIKELRELIPNgA------KCSIDSLLERTIKHMLFMQ 616 77899************77......5555556777776666655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF14215	1.1E-35	5	166	IPR025610	Transcription factor MYC/MYB N-terminal
PROSITE profile	PS50888	10.391	566	615	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 746 aa Download sequence Send to blast
MGTELQQILR SLCLNTEWKY AVFWKLKHRA RMVLTWEDAY YDNCEQYDPP ENKCFNKKLE 60 KLHDGLYSHD PLGLAVAKMS YHVYSLGEGI VGQVAVTGRH RWIFAEKHAM SASSSLEYSD 120 GWHAQFSVGI RTIAVVAVVP LGVVQLGSLN KVVEDIKLVT HIRDVFSALQ DSYVGHIPIQ 180 IQSNMDSSLC LPDIPSKSLA SENVPASLHN SDKTLNRDSG DVWLSVFPYL GKDYDSSYII 240 PLPGNNQKKV VDMVNNCGGP GLPTFEDEES DKSLQSRTNS INLEHHKVVG VNLLDYWKCG 300 GQTSGCKDAG GGSVDNANPM LHDSVMGGVD LSNVLPAERV GVDFSYFPSN PHSSVCNKVR 360 LGDIDHYQNG LLHASKPPDV NFQKDLKNLE FQTESGYMDT SSTSLKFPAG YELHEALGPA 420 FLKRSKYFDL ETEKTEGITP DMPEQMSSNQ MTSDSCPEHL LEAVVASVCQ SGSDVKSEKS 480 FCKSVQSLLT TEKYPEPSSR TTLTMDSSNY SIDQPSIRGD DRQRFLSSPG VCGVMSPKGF 540 SSTCPSACSE QLDRSSGPAK NNKKRSRPGE NCRPRPRDRQ LIQDRIKELR ELIPNGAKCS 600 IDSLLERTIK HMLFMQSITK HADKLNKSAD TKLCNKETGM LGTSCERGSS WAVEVGGNLK 660 VCSIMVENLN KNGQMVVEMM CEECSHFLEI AEAIRSLGLT ILKGVTEARG DNTLICFVVE 720 GQNNRSIHRM DILWSLVQIL QPKNVV

Sequence ? help Back to Top

Protein Sequence Length: 746 aa Download sequence Send to blast

MGTELQQILR SLCLNTEWKY AVFWKLKHRA RMVLTWEDAY YDNCEQYDPP ENKCFNKKLE  60
KLHDGLYSHD PLGLAVAKMS YHVYSLGEGI VGQVAVTGRH RWIFAEKHAM SASSSLEYSD  120
GWHAQFSVGI RTIAVVAVVP LGVVQLGSLN KVVEDIKLVT HIRDVFSALQ DSYVGHIPIQ  180
IQSNMDSSLC LPDIPSKSLA SENVPASLHN SDKTLNRDSG DVWLSVFPYL GKDYDSSYII  240
PLPGNNQKKV VDMVNNCGGP GLPTFEDEES DKSLQSRTNS INLEHHKVVG VNLLDYWKCG  300
GQTSGCKDAG GGSVDNANPM LHDSVMGGVD LSNVLPAERV GVDFSYFPSN PHSSVCNKVR  360
LGDIDHYQNG LLHASKPPDV NFQKDLKNLE FQTESGYMDT SSTSLKFPAG YELHEALGPA  420
FLKRSKYFDL ETEKTEGITP DMPEQMSSNQ MTSDSCPEHL LEAVVASVCQ SGSDVKSEKS  480
FCKSVQSLLT TEKYPEPSSR TTLTMDSSNY SIDQPSIRGD DRQRFLSSPG VCGVMSPKGF  540
SSTCPSACSE QLDRSSGPAK NNKKRSRPGE NCRPRPRDRQ LIQDRIKELR ELIPNGAKCS  600
IDSLLERTIK HMLFMQSITK HADKLNKSAD TKLCNKETGM LGTSCERGSS WAVEVGGNLK  660
VCSIMVENLN KNGQMVVEMM CEECSHFLEI AEAIRSLGLT ILKGVTEARG DNTLICFVVE  720
GQNNRSIHRM DILWSLVQIL QPKNVV

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015891480.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015891480.1	0.0	transcription factor bHLH155 isoform X2
TrEMBL	A0A2P5CNK7	0.0	A0A2P5CNK7_PARAD; MYC/MYB transcription factor
STRING	XP_010111900.1	0.0	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5027	20	22

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G31280.1	1e-179	conserved peptide upstream open reading frame 7