PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015891673.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

GRAS

Protein Properties

Length: 166aa MW: 18786.6 Da PI: 8.4859

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015891673.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	64.4	2.3e-20	56	164	265	374
GRAS 265 salfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgsl 358 sa+fd+le+ + +e+e r+ +E + l++ i+++va+eg+er+ r+ ++e Wr+ + + + + +ls+ a+ q +l+ ++++ + +ve + ++l XP_015891673.1 56 SAFFDCLENCV-KEEECRKAIEGV-LAEGIRDIVAKEGSERITRNVKMEVWRAFFARYKMVETKLSDAAMYQTSLVAKQFGcGSACNVERNGKCL 148 79****997.788999999998.9***************************************************9999****** PP GRAS 359 vlgWkdrpLvsvSaWr 374 + gWk+ p+ s+S+W+ XP_015891673.1 149 IAGWKGTPINSLSVWK 164 *************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03514	7.8E-18	56	164	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 166 aa Download sequence Send to blast
MFARRIEHPL CKLSGLAQGY GDKDHVNFHE VSSPSSSKLP HTEKLPPYTT WIFLDSAFFD 60 CLENCVKEEE CRKAIEGVLA EGIRDIVAKE GSERITRNVK MEVWRAFFAR YKMVETKLSD 120 AAMYQTSLVA KQFGCGSACN VERNGKCLIA GWKGTPINSL SVWKFR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015891673.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024933634.1	1e-73	DELLA protein RGL1-like
TrEMBL	A0A0R0KPV6	1e-45	A0A0R0KPV6_SOYBN; Uncharacterized protein
TrEMBL	A0A151SJZ9	1e-45	A0A151SJZ9_CAJCA; DELLA protein RGL1
TrEMBL	A0A314ZYE6	3e-45	A0A314ZYE6_PRUYE; DELLA protein RGL1-like
TrEMBL	A0A445LI55	2e-45	A0A445LI55_GLYSO; DELLA protein RGL2
STRING	XP_008235214.1	8e-47	(Prunus mume)
STRING	XP_008369109.1	9e-48	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF479	33	162

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G03450.1	1e-12	RGA-like 2