PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015891697.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family WRKY
Protein Properties Length: 335aa    MW: 37135.4 Da    PI: 6.9199
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015891697.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY108.24e-34174231259
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     +Dgy+WrKYGqK vk+s+fprsYYrCts++C+vkk+vers +dp+vv++tYeg+H+h+
  XP_015891697.1 174 EDGYRWRKYGQKAVKNSPFPRSYYRCTSTSCNVKKRVERSFSDPSVVVTTYEGQHTHP 231
                     8********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381302.8E-1181335IPR017396PWRKY transcription factor, group IIc
Gene3DG3DSA:2.20.25.807.2E-35158233IPR003657WRKY domain
SuperFamilySSF1182901.83E-29165233IPR003657WRKY domain
PROSITE profilePS5081132.03168233IPR003657WRKY domain
SMARTSM007746.9E-41173232IPR003657WRKY domain
PfamPF031069.3E-27174231IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009624Biological Processresponse to nematode
GO:0009733Biological Processresponse to auxin
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MEKREIIKME ENYNSIGSLT FGEGGGGYTL SGMFDLCEAE KSSSLGFMEL LGVQDISPCL  60
FDFPHTLTAT SSSSSTLLVP SAPTIIPTPA ARKDSSEALN QPATPNSSSI SSASSEAINE  120
EQTKTDNQDQ DEGEEEHEDH QKTKKQLKAK KTNQKRQREP RFAFMTKSEV DHLEDGYRWR  180
KYGQKAVKNS PFPRSYYRCT STSCNVKKRV ERSFSDPSVV VTTYEGQHTH PSPVMARPSH  240
AAAVLPPAST ACATTNFAMP MPTPTTISHY HHHQQNHPFL DNLTPSFNFG YQGSTNSKTN  300
TILHERRLCN LAGPSLLADH GLLQDIIPSH MLKQE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A5e-261662331077Probable WRKY transcription factor 4
2lex_A5e-261662331077Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00069PBMTransfer from AT2G47260Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015891697.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ3774335e-88GQ377433.1 (Populus tomentosa x P. bolleana) x P. tomentosa WRKY transcription factor 13 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015891697.10.0probable WRKY transcription factor 23
SwissprotO229003e-73WRK23_ARATH; WRKY transcription factor 23
TrEMBLA0A386IPJ01e-140A0A386IPJ0_ZIZJJ; WRKY transcription factor 60 (Fragment)
STRINGcassava4.1_012593m1e-110(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF100234114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47260.12e-57WRKY DNA-binding protein 23
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Guo D,Qin G
    EXB1/WRKY71 transcription factor regulates both shoot branching and responses to abiotic stresses.
    Plant Signal Behav, 2016. 11(3): p. e1150404
    [PMID:26914912]
  4. Prát T, et al.
    WRKY23 is a component of the transcriptional network mediating auxin feedback on PIN polarity.
    PLoS Genet., 2018. 14(1): p. e1007177
    [PMID:29377885]