PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015891738.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

FAR1

Protein Properties

Length: 611aa MW: 69664.3 Da PI: 8.5518

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015891738.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	67.4	3.6e-21	55	141	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY +YAke+GFsv s +k+ k +e+++++fvC keg +++++++ ++r r tr +Ckakl v ++k+gk+++t +++eH+H+l+ XP_015891738.1 55 EFYIKYAKEAGFSVHSSLTKRCKGAKEVVRKEFVCFKEGVSSKKDDE---RKRCRGMTRENCKAKLAVVRSKTGKFVITVFVEEHSHPLS 141 6**************************************998877...99999*******************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	7.1E-19	55	141	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	3.2E-32	213	306	IPR018289	MULE transposase domain

Sequence ? help Back to Top
Protein Sequence Length: 611 aa Download sequence Send to blast
MSVEQLEANS DCRRVEDISL LSHSKSVDDV YIPQVVENCK PKVGQEFESI DGAHEFYIKY 60 AKEAGFSVHS SLTKRCKGAK EVVRKEFVCF KEGVSSKKDD ERKRCRGMTR ENCKAKLAVV 120 RSKTGKFVIT VFVEEHSHPL STPRRVHLLR SHRSVSEAKK SLTLQFSAAN VPTHQQISIL 180 EFEAGDVDDD GKLKRCFWAD SVSRRAYGCF GDVVVFDTTY NTNQYGMIFA PLVGVNNHGQ 240 MVLFACAFLS DEKTVSFVWL FELLKDSMPT NNPKMIITDQ DPAMKKAIVQ SLPNTFHRYC 300 SWHILEKFST YLNAITYRDF YKDFQQCIWE SECPEEFERK WVTTIEKASL DNNDWLKSTF 360 ELRSRWVPAY VNHIFSAGMS SSQRVESSHA FFKKYVLKRN LLMDFILRFN RALAHQRHEE 420 LGVDHVDINE KLFESEELPC RHILAFLRLF GNIPLPNQYI MKRWTRGAKC QIITDKQGVE 480 IGGQRSSILT WRAKLFQLAS EVIDKAIIYE EASVIVNDGL QSLLGKIESI VSNTKSGGIS 540 EKGSTAHDYE ALKDPSAVRA KGCGQRLKRG KEKAAHLYRS SQNEESPQNA SEYDSKANSL 600 SSTGLHEKMK G

Sequence ? help Back to Top

Protein Sequence Length: 611 aa Download sequence Send to blast

MSVEQLEANS DCRRVEDISL LSHSKSVDDV YIPQVVENCK PKVGQEFESI DGAHEFYIKY  60
AKEAGFSVHS SLTKRCKGAK EVVRKEFVCF KEGVSSKKDD ERKRCRGMTR ENCKAKLAVV  120
RSKTGKFVIT VFVEEHSHPL STPRRVHLLR SHRSVSEAKK SLTLQFSAAN VPTHQQISIL  180
EFEAGDVDDD GKLKRCFWAD SVSRRAYGCF GDVVVFDTTY NTNQYGMIFA PLVGVNNHGQ  240
MVLFACAFLS DEKTVSFVWL FELLKDSMPT NNPKMIITDQ DPAMKKAIVQ SLPNTFHRYC  300
SWHILEKFST YLNAITYRDF YKDFQQCIWE SECPEEFERK WVTTIEKASL DNNDWLKSTF  360
ELRSRWVPAY VNHIFSAGMS SSQRVESSHA FFKKYVLKRN LLMDFILRFN RALAHQRHEE  420
LGVDHVDINE KLFESEELPC RHILAFLRLF GNIPLPNQYI MKRWTRGAKC QIITDKQGVE  480
IGGQRSSILT WRAKLFQLAS EVIDKAIIYE EASVIVNDGL QSLLGKIESI VSNTKSGGIS  540
EKGSTAHDYE ALKDPSAVRA KGCGQRLKRG KEKAAHLYRS SQNEESPQNA SEYDSKANSL  600
SSTGLHEKMK G

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015891738.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015891738.1	0.0	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A067D5X9	1e-175	A0A067D5X9_CITSI; Uncharacterized protein
STRING	XP_006428864.1	1e-153	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF13280	2	5

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-76	FAR1-related sequence 5