PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015891828.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family bHLH
Protein Properties Length: 676aa    MW: 74870.9 Da    PI: 9.3167
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015891828.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH47.63e-15475520555
                     HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     hn  E+rRRd iN+++ eL+ellP++      K++K+++L +A+eY++ Lq
  XP_015891828.1 475 HNLSEKRRRDTINKKMRELKELLPNC-----NKVDKVSMLDEAIEYLQTLQ 520
                     9************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.51E-15466524No hitNo description
Gene3DG3DSA:4.10.280.105.9E-19467537IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.14E-20467538IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.041470519IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-12475520IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.8E-17476525IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 676 aa     Download sequence    Send to blast
MDMRKSTQPR MTTTSFAAAS MYEKEFMELV WEKGEIQVRG PSCRWKSDIV EAKGEKRGKL  60
GSIVNFGRAT EDCDHGLKYT TPSVDHHYKP HPHPHHSHEF NSEKIAAAAT AATGNNNDCR  120
IVPEYENEND CAEYENECPE YEYAHLKPAV NINDASKLER TITHTNHRLR AFPRRNCSDH  180
IDSTSLPEVV LERQAASAAH KITTTTTTTP SHSSHSSHDS HSHSHYGGQW FLGVGVASNH  240
QEKNSNKKWN KSRRNSNNLS HLSRGIRLAT VPKPNNVATN VNAPCTCTAA AAATKYSIVT  300
DKDHQRRPDA LGIVPNHHLG SLTANTASVK HLQINPTVKP LDLHYLSLRP HVPADEHSEA  360
FGNKVVALEE QLPHKKTKTP KISKPKTKTQ TATGKYFTRP PPPVPSASVC SLGASNSPAH  420
AHAHAHPLKR TSEETEESAY PCKSVENEPT AQAVIKAAVA PGGGRSKRNR TPQIHNLSEK  480
RRRDTINKKM RELKELLPNC NKVDKVSMLD EAIEYLQTLQ RQLQMLSMGN EIMAPQMMLP  540
AGAPHLCDPS MMRLSSSLLP CFPTTTSTST STSAGTGTGG HSNPYNSGFQ MLPFPAYLLP  600
FNTIPLHSLV PPAISRPTTL FDQPYFASKY YSNPHFVHMF YNNNNNTPTN HVERSRTTQS  660
TSTHQGTHQN SKQCSA
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015891828.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024933203.10.0uncharacterized protein LOC107426221 isoform X4
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF133291829
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.24e-26phytochrome interacting factor 3