PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015891841.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family MYB
Protein Properties Length: 418aa    MW: 46922 Da    PI: 4.5088
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015891841.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.32.7e-161461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +grWT eEd++l+++++  G g+W++ ++  g+ R++k+c++rw +yl
   XP_015891841.1 14 KGRWTSEEDQILIKYIQVNGEGSWRSLPKNAGLLRCGKSCRLRWINYL 61
                     79******************************99************97 PP
2Myb_DNA-binding543.9e-1767112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+ + eE++l+v++++ lG++ W++Ia++++ gRt++++k++w+++l
   XP_015891841.1  67 RGNISSEEEDLIVKLHASLGNR-WSLIASHLP-GRTDNEIKNYWNSHL 112
                      7899******************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.609.1E-22564IPR009057Homeodomain-like
PROSITE profilePS5129417.053961IPR017930Myb domain
SuperFamilySSF466894.49E-2811108IPR009057Homeodomain-like
SMARTSM007177.4E-121363IPR001005SANT/Myb domain
PfamPF002491.9E-141461IPR001005SANT/Myb domain
CDDcd001671.90E-81661No hitNo description
PROSITE profilePS5129425.77962116IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.4E-2565116IPR009057Homeodomain-like
SMARTSM007171.8E-1666114IPR001005SANT/Myb domain
PfamPF002493.9E-1567112IPR001005SANT/Myb domain
CDDcd001671.86E-1071112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009813Biological Processflavonoid biosynthetic process
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 418 aa     Download sequence    Send to blast
MGRAPCCEKV GLKKGRWTSE EDQILIKYIQ VNGEGSWRSL PKNAGLLRCG KSCRLRWINY  60
LRADLKRGNI SSEEEDLIVK LHASLGNRWS LIASHLPGRT DNEIKNYWNS HLSRKIHTFR  120
KPINIGNESL PSIVDLAKIN VNPPTKRKGG RTSRWAMKKN KSYVQKEPVI SSSTEINVAD  180
LEINEVVPLP QTPAIDNESL SVSNTDECMV WNPDSEDKHN HHHHNNNNKK VPDEEAGGGE  240
TENSSILCLD VEKEKNINEI SGPYDEEQGI DDGMLCFNDI MDSELLEANG VYMTINEEKE  300
SIDAVGLSEE RESRVTFQND KMGMSDQEIE SSGNLSSSNG GGGIGEVGDW YSCSSMNSGL  360
DDHVGLDFWD WESVVQEQDI DENEKMLSWL WESDSSETLK FGDVDSEKQS AMVAWLLS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A3e-24121162105MYB PROTO-ONCOGENE PROTEIN
1h8a_C3e-241211625128MYB TRANSFORMING PROTEIN
1mse_C3e-24121162105C-Myb DNA-Binding Domain
1msf_C3e-24121162105C-Myb DNA-Binding Domain
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00627PBMTransfer from PK06182.1Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015891841.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015891841.10.0transcription factor MYB30
TrEMBLA0A2I4EP801e-131A0A2I4EP80_JUGRE; transcription factor MYB12-like
STRINGEOX952261e-128(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47460.13e-78myb domain protein 12