PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015891936.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family GATA
Protein Properties Length: 124aa    MW: 13871 Da    PI: 10.7945
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015891936.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA63.52.5e-201650135
            GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                    C+ C+tt+TplWR+gp g+++LCnaCG++yrkk++
  XP_015891936.1 16 CTDCRTTTTPLWRSGPAGPRSLCNACGIRYRKKRR 50
                    ********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577161.9E-14850No hitNo description
PROSITE profilePS5011413.6531046IPR000679Zinc finger, GATA-type
SMARTSM004011.9E-151071IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.107.6E-171450IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.27E-151550No hitNo description
PROSITE patternPS0034401641IPR000679Zinc finger, GATA-type
PfamPF003203.8E-181650IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 124 aa     Download sequence    Send to blast
MNSSSPSQDK DTQRSCTDCR TTTTPLWRSG PAGPRSLCNA CGIRYRKKRR DLLGLNKGEE  60
KRRRKNKKKT MKSSGSKLGV SLNQLGLMAI QRGITAFEES MLKEEEQAAI MLMALSSESF  120
HIFA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14764KRRDLLGLNKGEEKRRRK
25965EKRRRKN
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015891936.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015891936.12e-87GATA transcription factor 15-like
TrEMBLA0A1U8AK572e-37A0A1U8AK57_NELNU; GATA transcription factor 16-like
STRINGXP_010268075.13e-38(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15693298
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49300.19e-24GATA transcription factor 16