PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015892240.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family HD-ZIP
Protein Properties Length: 192aa    MW: 22225.2 Da    PI: 7.3128
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015892240.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox39.69.2e-13971252856
                     HHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox  28 eereeLAkklgLterqVkvWFqNrRakek 56 
                      +++ LA++l+L+ rqV vWFqNrRa+ k
  XP_015892240.1  97 GQKQALADELNLKPRQVEVWFQNRRARTK 125
                     5899***********************98 PP
2HD-ZIP_I/II92.26e-30871601790
     HD-ZIP_I/II  17 sFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                     + eee+  e  +K++la eL+l+prqv+vWFqnrRARtk+kq+E+d+e+Lk+++++l+een+rL+ke eeLr++
  XP_015892240.1  87 HQEEENGSERGQKQALADELNLKPRQVEVWFQNRRARTKLKQTEMDCEFLKKCCENLSEENRRLKKELEELRSQ 160
                     23445567889************************************************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003896.7E-462131IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.9E-1196125IPR009057Homeodomain-like
SuperFamilySSF466891.54E-1096136IPR009057Homeodomain-like
PfamPF000464.8E-1097125IPR001356Homeobox domain
CDDcd000863.05E-798128No hitNo description
PROSITE profilePS5007112.27698127IPR001356Homeobox domain
PROSITE patternPS000270102125IPR017970Homeobox, conserved site
SMARTSM003406.7E-17127172IPR003106Leucine zipper, homeobox-associated
PfamPF021832.2E-9127160IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MRDNILEACN TGLQLGLGLG EYPIISHERK KKDNDNNYNS NSYNNNNDKP VVCLDLSFSL  60
CPKREAPVVD LNIADQASSL KKKVDHHQEE ENGSERGQKQ ALADELNLKP RQVEVWFQNR  120
RARTKLKQTE MDCEFLKKCC ENLSEENRRL KKELEELRSQ KIETSTTLYT THQIPKDEKL  180
MIICSSCEKI VK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1119127RRARTKLKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015892240.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009342828.12e-53PREDICTED: homeobox-leucine zipper protein HAT22-like
TrEMBLA0A498HPF73e-49A0A498HPF7_MALDO; Uncharacterized protein
STRINGXP_009342828.11e-52(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56642851
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.15e-23homeobox from Arabidopsis thaliana