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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
XP_015892246.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
|
| Family |
BBR-BPC |
| Protein Properties |
Length: 313aa MW: 35332.1 Da PI: 10.0243 |
| Description |
BBR-BPC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| XP_015892246.1 | genome | NCBI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GAGA_bind | 362.5 | 8.6e-111 | 7 | 313 | 7 | 301 |
GAGA_bind 7 re..rnkg.yye..............pa.aslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnklla 83
+e r+k yy+ ++ ++l +++++ms+iaerda+irern+alsek++a+a+rd+a+ qrd+alaer+ al+erdn+l+a
XP_015892246.1 7 HEngRHKMdYYRgvqypwnmmaqhqaKEpNALV--MNKKIMSIIAERDAAIRERNVALSEKNEALAARDEALRQRDEALAERDTALMERDNALAA 99
333688877888888888888877553345666..99********************************************************** PP
GAGA_bind 84 lllvenslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkak.kkkkksekskkk 177
l+ ++n++ + p+g +v +g+k +++ + +++++ + +++++++a+pi+ ++a ++++ k+++++k +++ k kk +e+ +++
XP_015892246.1 100 LQIRDNTM--NFPSGGGVQRGVKRVHHPSS-HLSNMSEANYSSKDMQITDAFPITVISSDAVKSRQAKRTKENKAVPSRTPKpTRKKVGEDLNRQ 191
****9985..578899999*******8887.779*********************9999999999888666655444433332445555555555 PP
GAGA_bind 178 vkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekL 272
+++ ++ k+e++s d++ln v++Dest+PvP+CsCtG++rqCYkWGnGGWqS+CCtt++S+yPLP+++++r+aR++grKmS+++f++lL++L
XP_015892246.1 192 ACSDG--TKYKTEWDSHDVGLNLVTFDESTMPVPMCSCTGVPRQCYKWGNGGWQSSCCTTNMSMYPLPQMPNKRHARMGGRKMSGSVFTRLLSRL 284
55555..78************************************************************************************** PP
GAGA_bind 273 aaeGydlsnpvDLkdhWAkHGtnkfvtir 301
aa+G+dls p+DLkd+WA+HGtn+++ti+
XP_015892246.1 285 AAQGHDLSMPLDLKDYWARHGTNRYITIK 313
****************************8 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0009723 | Biological Process | response to ethylene |
| GO:0050793 | Biological Process | regulation of developmental process |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0042803 | Molecular Function | protein homodimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 313 aa
Download sequence Send
to blast |
MDGGRQHENG RHKMDYYRGV QYPWNMMAQH QAKEPNALVM NKKIMSIIAE RDAAIRERNV 60
ALSEKNEALA ARDEALRQRD EALAERDTAL MERDNALAAL QIRDNTMNFP SGGGVQRGVK 120
RVHHPSSHLS NMSEANYSSK DMQITDAFPI TVISSDAVKS RQAKRTKENK AVPSRTPKPT 180
RKKVGEDLNR QACSDGTKYK TEWDSHDVGL NLVTFDESTM PVPMCSCTGV PRQCYKWGNG 240
GWQSSCCTTN MSMYPLPQMP NKRHARMGGR KMSGSVFTRL LSRLAAQGHD LSMPLDLKDY 300
WARHGTNRYI TIK
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | JX827164 | 1e-153 | JX827164.1 Ziziphus jujuba cultivar Xianwang GAGA-binding transcriptional activator mRNA, partial cds. |
