PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015892252.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family BBR-BPC
Protein Properties Length: 288aa    MW: 32254.7 Da    PI: 10.0766
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015892252.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind360.82.7e-1101128818301
       GAGA_bind  18 aslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllvenslasalpvgvqvlsgtksidslq 112
                     ++l   +++++ms+iaerda+irern+alsek++a+a+rd+a+ qrd+alaer+ al+erdn+l+al+ ++n++  + p+g +v +g+k +++  
  XP_015892252.1  11 NALV--MNKKIMSIIAERDAAIRERNVALSEKNEALAARDEALRQRDEALAERDTALMERDNALAALQIRDNTM--NFPSGGGVQRGVKRVHHPS 101
                     4555..99**************************************************************9985..578899999*******888 PP

       GAGA_bind 113 qlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkak.kkkkksekskkkvkkesaderskaekksidlvlngvslDes 206
                       + +++++  +  +++++++a+pi+   ++a ++++ k+++++k   +++ k   kk +e+ +++  +++  ++ k+e++s d++ln v++Des
  XP_015892252.1 102 S-HLSNMSEANYSSKDMQITDAFPITVISSDAVKSRQAKRTKENKAVPSRTPKpTRKKVGEDLNRQACSDG--TKYKTEWDSHDVGLNLVTFDES 193
                     7.779*********************999999999988866665544443333244555555555555555..78******************** PP

       GAGA_bind 207 tlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
                     t+PvP+CsCtG++rqCYkWGnGGWqS+CCtt++S+yPLP+++++r+aR++grKmS+++f++lL++Laa+G+dls p+DLkd+WA+HGtn+++ti+
  XP_015892252.1 194 TMPVPMCSCTGVPRQCYKWGNGGWQSSCCTTNMSMYPLPQMPNKRHARMGGRKMSGSVFTRLLSRLAAQGHDLSMPLDLKDYWARHGTNRYITIK 288
                     **********************************************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012261.4E-1321288IPR010409GAGA-binding transcriptional activator
PfamPF062178.7E-9910288IPR010409GAGA-binding transcriptional activator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0050793Biological Processregulation of developmental process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MMAQHQAKEP NALVMNKKIM SIIAERDAAI RERNVALSEK NEALAARDEA LRQRDEALAE  60
RDTALMERDN ALAALQIRDN TMNFPSGGGV QRGVKRVHHP SSHLSNMSEA NYSSKDMQIT  120
DAFPITVISS DAVKSRQAKR TKENKAVPSR TPKPTRKKVG EDLNRQACSD GTKYKTEWDS  180
HDVGLNLVTF DESTMPVPMC SCTGVPRQCY KWGNGGWQSS CCTTNMSMYP LPQMPNKRHA  240
RMGGRKMSGS VFTRLLSRLA AQGHDLSMPL DLKDYWARHG TNRYITIK
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015892252.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX8271641e-153JX827164.1 Ziziphus jujuba cultivar Xianwang GAGA-binding transcriptional activator mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015892252.10.0protein BASIC PENTACYSTEINE4-like isoform X2
SwissprotQ8S8C61e-125BPC4_ARATH; Protein BASIC PENTACYSTEINE4
TrEMBLW9R7S80.0W9R7S8_9ROSA; Uncharacterized protein
STRINGXP_010095680.10.0(Morus notabilis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G21240.21e-127basic pentacysteine 4