PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015892293.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family bHLH
Protein Properties Length: 570aa    MW: 61416.2 Da    PI: 6.5117
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015892293.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH283.8e-09380427455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  XP_015892293.1 380 SHSLAERVRREKISERMKLLQDLVPGC----NKVTGKALMLDEIINYVQSLQ 427
                     8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.22E-16374442IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.41E-10374431No hitNo description
Gene3DG3DSA:4.10.280.101.6E-16376444IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.663376426IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.2E-6380427IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-10382432IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 570 aa     Download sequence    Send to blast
MENDFFLNAG IPPPPLHFES GPSIPTWHAI SAALEIQPTE MNCSSDRSPD CFYNPSSWDN  60
NNNKSTDQSM HFDSALSSMV SSPAASNSNV SNENFVIREL IGKLGNIGNS GEISPHSQPL  120
LGSGTTIPAS SYIGGNNSTN TSCYSTPLNS PPKINLPMMD HLVKEKIPSL GKSMPLNSTV  180
AEFSADPGFA ERAARFSCFG SRSFNGRTGQ LGLSNGELPS RSNTLMVNGK MPRVSSSPSL  240
KALGSHMGIQ ENKNSPLQDR TGLAISQEES TVSEQNPNGE TGINATNDTN SRKRKASSKG  300
KPKDSSQAKV AEINENSNAK RCKSTEGNGN ENGTVKTEEE AKASSGSTGD EKQTKTSQKP  360
PEPPKDYIHV RARRGQATDS HSLAERVRRE KISERMKLLQ DLVPGCNKVT GKALMLDEII  420
NYVQSLQRQV EFLSMKLASV NTSLDTNMDS LMSKDIFQPN SSLPHPIFSV DSSAPAIYGH  480
QPQQNPALHN NISNGPVSHC SVDPLDSALC QNLGLQLPSL NGFTEAVSQY QAFAEDDLQS  540
IVQMGFGQNP ALQSQSLHGI NQVSHMKVEL
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015892293.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015892293.10.0transcription factor bHLH62
TrEMBLA0A2P5DP610.0A0A2P5DP61_PARAD; Basic helix-loop-helix transcription factor
STRINGEMJ023810.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF25303480
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07340.11e-119bHLH family protein